Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Forward (+)

1929314 .. 1932401

Gene Structure 3088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGAGCGGTGAACAACATCTGGAACGCCAAAGAAGTAGCTGAAGCTCCGGATAACTCTGCCATCCAAATCCGCTTTTCTTCTCAATCCGTCGACCCTTCCCTCCCTCTCCCCCAAATCACGCCGCTCGTTACGAAGCTGTGCAAGGATCTGTTCAAGGAATGGTCGGATTTGGACGATTCTCGCTTCTCCGTCGAGACGGTTTCCGGCGGCATCACGAATCTCTTACTGAAGGCTACTGTGAAGGAGGATGATGGAAATGAGGTTTCGGTGACGGTGAGGCTGTATGGACCTAACACTGATTATGTGATCAATCGCGAGCGCGAATTGCAGGCAATCAAGTACCTCTCGGCTGCGGGGTTTGGTGCGAGTTTGCTTGCAGTTTTTGGAAATGGAATGGTGCAGTCGTTTATAAATGCACGTACACTCGTCCCATTAGACATGAGAGATCCAAAGCTGGCTGCTGATATTGCCAAGGAACTACGTCGGTTCCATCAGGTGGAAATTCCTGGTTCTAAGGAACCTCAGCTGTGGACCGACATTTTCAAGTTCTACGAGAAAGCCTCTGCTCTTGAATTTGATGACAACGAGAAGCAGAAGATCTACGAAACCATTTCATTTAGTGAAGTTCACAATGAACTCGTTGAGGTCAAGGAATTGACTAGCCATTTTAATGCTCCCGTGGTTTTTTGTCACAATGACTTGCTTTCTGGAAATATAATGGTGAATGACGAAGAAGAGAAACTCTACTTCATTGATTTTGAGTATGGATCATACAATTACAGAGGCTTTGACATCGGTAATCACTTCAATGAATATGCAGGCTATGAATGTGACTACAGCTTATACCCAACCAAGGAAGAACAATACCATTTCTTCAGGCATTATTTGGGACCTGAAAAACCACAAGCGGTATCGGACAAAGATCTTGAAGCTCTATATATTGAGGCAAATACATATATGTTAGCTTCACACTTGTACTGGGCTTTATGGGGATTAATCCAGGCAAAGTTTTCCCCAATCGAGTTCGATTATCTCAGTTATTTCTTCCTGCGATACAACGAATACAAAAAGCAGAAGGAAAAGTGCTTATTGTTGGCAAGATCATTCCTCTCACGATCTAATGCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

378

Amino Acids

43.35

Weight (kDa)

4.94

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	65 - 356	4.9e-96	Choline/ethanolamine kinase
APH	PF01636	85 - 272	1.7e-13	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	2 cut(s)	8, 127
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	2 cut(s)	318, 324
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	6 cut(s)	8, 73, 125, 210, 356, 911
AclWI	GGATC	3 cut(s)	156, 443, 778
AcsI	RAATTY	2 cut(s)	504, 575
AcuI	CTGAAG	3 cut(s)	63, 251, 862
AfaI	GTAC	3 cut(s)	344, 424, 980
AfiI	CCNNNNNNNGG	2 cut(s)	499, 856
AgsI	TTSAA	5 cut(s)	157, 547, 575, 811, 932
AjnI	CCWGG	2 cut(s)	508, 1002
AluBI	AGCT	8 cut(s)	41, 47, 139, 457, 529, 843, 935, 968
AluI	AGCT	8 cut(s)	41, 47, 139, 457, 529, 843, 935, 968
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	156, 443, 778
Aor13HI	TCCGGA	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	353, 461
ApoI	RAATTY	2 cut(s)	504, 575
AseI	ATTAAT	1 cut(s)	998
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	3 cut(s)	290, 534, 893
AsuHPI	GGTGA	4 cut(s)	22, 283, 289, 736
AvaII	GGWCC	3 cut(s)	290, 534, 893
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	340, 448
BccI	CCATC	3 cut(s)	71, 248, 501
BciT130I	CCWGG	2 cut(s)	510, 1004
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	838
BglII	AGATCT	2 cut(s)	600, 925
BisI	GCNGC	4 cut(s)	125, 211, 354, 462
BlsI	GCNGC	4 cut(s)	126, 212, 355, 463
Bme1390I	CCNGG	2 cut(s)	510, 1004
Bme18I	GGWCC	3 cut(s)	290, 534, 893
BmgT120I	GGNCC	3 cut(s)	290, 534, 893
BmiI	GGNNCC	3 cut(s)	491, 522, 894
BmrFI	CCNGG	2 cut(s)	510, 1004
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	991
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
Bpu10I	CCTNAGC	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	474, 681, 855
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 856
Bse1I	ACTGG	1 cut(s)	986
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	510, 1004
BseDI	CCNNGG	3 cut(s)	474, 681, 855
BseGI	GGATG	2 cut(s)	63, 256
BseLI	CCNNNNNNNGG	2 cut(s)	499, 856
BseMII	CTCAG	2 cut(s)	539, 1051
BseNI	ACTGG	1 cut(s)	986
BseXI	GCAGC	2 cut(s)	340, 448
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	318, 324
BsiSI	CCGG	2 cut(s)	50, 207
BslFI	GGGAC	2 cut(s)	416, 906
BslI	CCNNNNNNNGG	2 cut(s)	499, 856
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	416, 906
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
Bsp68I	TCGCGA	1 cut(s)	318
BspACI	CCGC	6 cut(s)	8, 73, 125, 210, 356, 911
BspCNI	CTCAG	2 cut(s)	538, 1050
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	2 cut(s)	318, 324
BspLI	GGNNCC	3 cut(s)	491, 522, 894
BspPI	GGATC	3 cut(s)	156, 443, 778
BsrBI	CCGCTC	2 cut(s)	8, 127
BsrI	ACTGG	1 cut(s)	986
BssECI	CCNNGG	3 cut(s)	474, 681, 855
BssMI	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
BssT1I	CCWWGG	2 cut(s)	474, 855
Bst2UI	CCWGG	2 cut(s)	510, 1004
Bst4CI	ACNGT	3 cut(s)	202, 241, 277
Bst6I	CTCTTC	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	5 cut(s)	320, 333, 378, 459, 823
BstDEI	CTNAG	3 cut(s)	516, 525, 1037
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	63, 256
BstFNI	CGCG	2 cut(s)	318, 324
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	8 cut(s)	151, 312, 451, 603, 773, 928, 1106, 1121
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 470
BstNI	CCWGG	2 cut(s)	510, 1004
BstSCI	CCNGG	2 cut(s)	508, 1002
BstSFI	CTRYAG	1 cut(s)	838
BstUI	CGCG	2 cut(s)	318, 324
BstV1I	GCAGC	2 cut(s)	340, 448
BstX2I	RGATCY	4 cut(s)	148, 448, 600, 925
BstYI	RGATCY	4 cut(s)	148, 448, 600, 925
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	2 cut(s)	63, 256
BtsIMutI	CAGTG	1 cut(s)	297
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	5 cut(s)	320, 333, 378, 459, 823
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	290, 534, 893
Csp6I	GTAC	3 cut(s)	343, 423, 979
CviAII	CATG	1 cut(s)	442
CviQI	GTAC	3 cut(s)	343, 423, 979
DdeI	CTNAG	3 cut(s)	516, 525, 1037
DpnI	GATC	8 cut(s)	150, 311, 450, 602, 772, 927, 1105, 1120
DpnII	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Eco130I	CCWWGG	2 cut(s)	474, 855
Eco47I	GGWCC	3 cut(s)	290, 534, 893
Eco57I	CTGAAG	3 cut(s)	63, 251, 862
EcoO109I	RGGNCCY	1 cut(s)	893
EcoRII	CCWGG	2 cut(s)	508, 1002
EcoT14I	CCWWGG	2 cut(s)	474, 855
ErhI	CCWWGG	2 cut(s)	474, 855
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	445
FaqI	GGGAC	2 cut(s)	416, 906
FatI	CATG	1 cut(s)	441
FauI	CCCGC	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	125, 211, 354, 462
FokI	GGATG	2 cut(s)	50, 263
Fsp4HI	GCNGC	4 cut(s)	125, 211, 354, 462
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	4 cut(s)	125, 211, 354, 462
HapII	CCGG	2 cut(s)	50, 207
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	179, 220
HpaII	CCGG	2 cut(s)	50, 207
HphI	GGTGA	4 cut(s)	22, 283, 289, 736
Hpy166II	GTNNAC	5 cut(s)	13, 94, 425, 534, 631
Hpy188I	TCNGA	2 cut(s)	169, 919
Hpy188III	TCNNGA	9 cut(s)	22, 50, 196, 217, 317, 572, 711, 929, 1116
Hpy8I	GTNNAC	5 cut(s)	13, 94, 425, 534, 631
Hpy99I	CGWCG	3 cut(s)	95, 197, 489
HpyAV	CCTTC	4 cut(s)	108, 226, 238, 1072
HpyCH4III	ACNGT	3 cut(s)	202, 241, 277
HpyCH4IV	ACGT	2 cut(s)	421, 484
HpyCH4V	TGCA	7 cut(s)	144, 331, 380, 403, 419, 821, 1127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 470
HpyF3I	CTNAG	3 cut(s)	516, 525, 1037
HpySE526I	ACGT	2 cut(s)	421, 484
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	322
Kpn2I	TCCGGA	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
LmnI	GCTCC	3 cut(s)	5, 52, 682
Lsp1109I	GCAGC	2 cut(s)	340, 448
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	2 cut(s)	421, 484
MaeIII	GTNAC	4 cut(s)	130, 271, 692, 833
MalI	GATC	8 cut(s)	150, 311, 450, 602, 772, 927, 1105, 1120
MbiI	CCGCTC	2 cut(s)	8, 127
MboI	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
MboII	GAAGA	7 cut(s)	72, 610, 746, 749, 868, 872, 1039
MflI	RGATCY	4 cut(s)	148, 448, 600, 925
MluCI	AATT	5 cut(s)	326, 504, 575, 656, 778
MmeI	TCCRAC	1 cut(s)	147
MroI	TCCGGA	1 cut(s)	49
MseI	TTAA	2 cut(s)	672, 998
MslI	CAYNNNNRTG	2 cut(s)	672, 810
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	2 cut(s)	50, 207
MspR9I	CCNGG	2 cut(s)	510, 1004
MvaI	CCWGG	2 cut(s)	510, 1004
MvnI	CGCG	2 cut(s)	318, 324
MwoI	GCNNNNNNNGC	2 cut(s)	328, 470
NdeII	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	3 cut(s)	491, 522, 894
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	3 cut(s)	271, 692, 833
NruI	TCGCGA	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	179, 220
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	126, 212, 355, 463
Ppu21I	YACGTR	1 cut(s)	422
PpuMI	RGGWCCY	1 cut(s)	893
PshBI	ATTAAT	1 cut(s)	998
PsiI	TTATAA	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	893
Psp6I	CCWGG	2 cut(s)	508, 1002
PspGI	CCWGG	2 cut(s)	508, 1002
PspN4I	GGNNCC	3 cut(s)	491, 522, 894
PspPI	GGNCC	3 cut(s)	290, 534, 893
PspPPI	RGGWCCY	1 cut(s)	893
PsuI	RGATCY	4 cut(s)	148, 448, 600, 925
PvuII	CAGCTG	1 cut(s)	529
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	3 cut(s)	344, 424, 980
RsaNI	GTAC	3 cut(s)	343, 423, 979
RseI	CAYNNNNRTG	2 cut(s)	672, 810
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	672, 998
SatI	GCNGC	4 cut(s)	125, 211, 354, 462
Sau3AI	GATC	8 cut(s)	148, 309, 448, 600, 770, 925, 1103, 1118
Sau96I	GGNCC	3 cut(s)	290, 534, 893
ScrFI	CCNGG	2 cut(s)	510, 1004
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	838
SinI	GGWCC	3 cut(s)	290, 534, 893
SmiMI	CAYNNNNRTG	2 cut(s)	672, 810
Sse9I	AATT	5 cut(s)	326, 504, 575, 656, 778
SsiI	CCGC	6 cut(s)	8, 73, 125, 210, 356, 911
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	508, 1002
StyI	CCWWGG	2 cut(s)	474, 855
TaaI	ACNGT	3 cut(s)	202, 241, 277
TaiI	ACGT	2 cut(s)	424, 487
TaqI	TCGA	4 cut(s)	93, 195, 1023, 1029
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	5 cut(s)	326, 504, 575, 656, 778
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	2 cut(s)	127, 213
TfiI	GAWTC	2 cut(s)	179, 220
Tru1I	TTAA	2 cut(s)	672, 998
Tru9I	TTAA	2 cut(s)	672, 998
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	3 cut(s)	271, 692, 833
TseI	GCWGC	2 cut(s)	353, 461
Tsp45I	GTSAC	3 cut(s)	271, 692, 833
TspDTI	ATGAA	5 cut(s)	606, 651, 742, 828, 843
TspGWI	ACGGA	2 cut(s)	79, 181
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	3 cut(s)	290, 534, 893
VspI	ATTAAT	1 cut(s)	998
XapI	RAATTY	2 cut(s)	504, 575
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.