Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011018

Physical Location & Seq

Genomic Coordinates Forward (+)

11512727 .. 11513695

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26975.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATCATGGTAACATGCCACCATCATCACCATCATCAATGGTAAATCATACCAATTCCAACATGATCATGATGCATATGACTTTCTTCTGGGGAAAGAACACGGAGATACTCTTCTCCGGCTGGCCCGGGACAAGTCTCGGCATGTACGTTCTATGTCTCATCGTCGTCTTCCTCCTTGCTGTTATCGTCGAGTGGCTTGCCCATTCTTCGATCCTTCGTGGACGTGGCTCCACTAGCCGCGCCAAGGGGCTCGTTCAGACCGCAGTCTACACACTCAAGACAGGCCTTGCTTATCTCGTGATGCTCGCCGTTATGTCCTTTAACGGTGGAGTTTTCATTGTCGCTATCGCCGGATTCGCCGTGGGTTTCATGCTCTTCGGAAGCACTGCTTTCAAGAACCCCTCTGATGACGAGAAACCCTTCGAACAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015089 GO:0015318 GO:0015677 GO:0015679 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0046658 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098705 GO:0098739 GO:0099402 GO:0099587

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

145

Amino Acids

15.81

Weight (kDa)

7.94

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	27 - 68	2.8e-08	Ctr copper transporter family
Ctr	PF04145	81 - 127	1.4e-10	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26975 AT3G46900 AT5G59030
fragaria_vesca	FvH4_3g37240
malus_domestica	MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica	Prupe.6G066900_v2.0.a1
pyrus_communis	pycom11g07530 pycom11g07540
rosa_chinensis	RchiOBHm_Chr5g0066991
rosa_laevigata	RLG00000035901
rosa_multiflora	Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014120
rosa_rugosa	Rorug05G0380600
rosa_samantha	Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana	Rw5G041170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	243
AciI	CCGC	2 cut(s)	241, 264
AclWI	GGATC	2 cut(s)	12, 208
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	397
AjiI	CACGTC	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	143, 164
AlwI	GGATC	2 cut(s)	12, 208
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	125, 286
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	2 cut(s)	129, 130
AsuHPI	GGTGA	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	163
BccI	CCATC	2 cut(s)	31, 40
BceAI	ACGGC	2 cut(s)	296, 347
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	2 cut(s)	129, 130
BcoDI	GTCTC	2 cut(s)	143, 164
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	129, 130
BmeT110I	CYCGRG	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	129, 130
BmsI	GCATC	2 cut(s)	63, 294
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	129, 130
BsaJI	CCNNGG	3 cut(s)	128, 246, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
BseDI	CCNNGG	3 cut(s)	128, 246, 363
BseLI	CCNNNNNNNGG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	127, 288
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	120, 129, 354
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	143, 164
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	127, 288
BsoBI	CYCGRG	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	4, 66, 213
BspACI	CCGC	2 cut(s)	241, 264
BspANI	GGCC	2 cut(s)	127, 288
BspFNI	CGCG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	12, 208
BspQI	GCTCTTC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	128, 246, 363
BssMI	GATC	3 cut(s)	4, 66, 213
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	2 cut(s)	119, 383
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	3 cut(s)	125, 201, 309
BstDSI	CCRYGG	1 cut(s)	363
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	7, 69, 216
BstMAI	GTCTC	2 cut(s)	143, 164
BstMBI	GATC	3 cut(s)	4, 66, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 359
BstNSI	RCATGY	2 cut(s)	19, 148
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	127, 128
BstUI	CGCG	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	127, 288
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	3 cut(s)	125, 201, 309
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	126
Cfr9I	CCCGGG	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	6 cut(s)	8, 16, 64, 70, 145, 373
CviJI	RGCY	7 cut(s)	123, 127, 199, 231, 240, 253, 288
CviKI_1	RGCY	7 cut(s)	123, 127, 199, 231, 240, 253, 288
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	3 cut(s)	6, 68, 215
DpnII	GATC	3 cut(s)	4, 66, 213
Eam1104I	CTCTTC	2 cut(s)	119, 383
EarI	CTCTTC	2 cut(s)	119, 383
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	6 cut(s)	11, 19, 67, 73, 148, 376
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	6 cut(s)	7, 15, 63, 69, 144, 372
FauNDI	CATATG	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	241
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	127, 288
HapII	CCGG	3 cut(s)	120, 129, 354
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	6 cut(s)	11, 19, 67, 73, 148, 376
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	3 cut(s)	120, 129, 354
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	224, 271
Hpy188I	TCNGA	3 cut(s)	261, 383, 409
Hpy188III	TCNNGA	4 cut(s)	70, 280, 301, 397
Hpy8I	GTNNAC	2 cut(s)	224, 271
Hpy99I	CGWCG	2 cut(s)	170, 194
HpyAV	CCTTC	2 cut(s)	227, 433
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	150, 226
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 359
HpySE526I	ACGT	2 cut(s)	150, 226
Hsp92II	CATG	6 cut(s)	11, 19, 67, 73, 148, 376
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	4, 66, 213
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	6 cut(s)	76, 109, 133, 142, 270, 367
LweI	GCATC	2 cut(s)	63, 294
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	150, 226
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	3 cut(s)	6, 68, 215
MboI	GATC	3 cut(s)	4, 66, 213
MboII	GAAGA	5 cut(s)	79, 106, 163, 201, 370
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	2 cut(s)	185, 415
Mph1103I	ATGCAT	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	3 cut(s)	120, 129, 354
MspR9I	CCNGG	2 cut(s)	129, 130
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	237, 359
NciI	CCSGG	2 cut(s)	129, 130
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	3 cut(s)	4, 66, 213
NlaIII	CATG	6 cut(s)	11, 19, 67, 73, 148, 376
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	2 cut(s)	19, 148
NspV	TTCGAA	1 cut(s)	426
PagI	TCATGA	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	242
PshAI	GACNNNNGTC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	3 cut(s)	4, 66, 213
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	129, 130
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	2 cut(s)	153, 229
SfaNI	GCATC	2 cut(s)	63, 294
SfuI	TTCGAA	1 cut(s)	426
SmaI	CCCGGG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	55
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	2 cut(s)	241, 264
SspMI	CTAG	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	127, 128
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	2 cut(s)	153, 229
TaqI	TCGA	3 cut(s)	192, 212, 426
TasI	AATT	1 cut(s)	55
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	328, 361
TspGWI	ACGGA	1 cut(s)	119
TspMI	CCCGGG	1 cut(s)	128
TspRI	CASTG	1 cut(s)	394
XceI	RCATGY	2 cut(s)	19, 148
XmaI	CCCGGG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.