Rh5DG471800

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011018
Physical Location & Seq
Reverse (-)
74668771 .. 74669760
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG471800.1

Sequence Viewer

Length: 540 bp
ATGGAAGGGATGGATCATAGTCATCATGACATGGGTTCCATGGCACCACCGCCATCCATGAACGGCACAACGAAGATGTCTCACCAGAAAATGATGATGCACATGACCTTCTTCTGGGGCACAACCGCCGAGGTCCTCTTCTCCAGATGGCCAGGCACCAAAACTGGCATGTATTACGTGGCCCTCCTCTTCGTCTTCGCCCTCGCTGTTCTCGTCGAGTGGCTCTCCCACTGTCGAATCATCAAGGTCGGGTCGGGACACGTGGCGGCCGGACTGATCCAGACCCTCTTGCATTGTCTCAGGGTCGGGTTGGCTTATATGGTAATGTTGGCTGTCATGTCCTTTAATGCTGGTGTGTTTTTGGTTGCTGTGGCTGGGCATACTCTGGGGTTCTTGCTCTTTGGGAGTAGGCGTGGGAAACCCCTACCTATTCTAATAAAAATCCCAACTCAGCTTCAGATGGGAATGGGTGGGCTGGGCATAGACACTGTCAAGAGTGATCCAGAATACATTCATTCATTGACCGACCATTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

179

Amino Acids

19.68

Weight (kDa)

8.63

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 35 - 79 1.6e-07 Ctr copper transporter family
Ctr PF04145 92 - 134 5.1e-10 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 155
AciI CCGC 3 cut(s) 50, 126, 266
AclWI GGATC 3 cut(s) 21, 271, 494
AcoI YGGCCR 2 cut(s) 149, 267
AcuI CTGAAG 1 cut(s) 440
AcvI CACGTG 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 259
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 454
AluI AGCT 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 84, 302
AlwI GGATC 3 cut(s) 21, 271, 494
AoxI GGCC 3 cut(s) 149, 180, 267
ArsI GACNNNNNNTTYG 1 cut(s) 514
Asp700I GAANNNNTTC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 133, 181
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 151
BanI GGYRCC 2 cut(s) 43, 155
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 187
BccI CCATC 4 cut(s) 4, 61, 141, 454
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 84, 302
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 181
BmiI GGNNCC 3 cut(s) 37, 45, 157
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 178, 262
BsaJI CCNNGG 2 cut(s) 39, 129
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 39, 129
BseGI GGATG 2 cut(s) 15, 53
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 313, 464
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 122
BseX3I CGGCCG 1 cut(s) 267
BseYI CCCAGC 2 cut(s) 374, 475
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 151, 182, 269
BshNI GGYRCC 2 cut(s) 43, 155
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 84, 302
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 3 cut(s) 151, 182, 269
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 13, 276, 499
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 3 cut(s) 50, 126, 266
BspANI GGCC 3 cut(s) 151, 182, 269
BspCNI CTCAG 2 cut(s) 312, 463
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 37, 45, 157
BspPI GGATC 3 cut(s) 21, 271, 494
BspT107I GGYRCC 2 cut(s) 43, 155
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 39, 129
BssMI GATC 3 cut(s) 13, 276, 499
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 233, 490
Bst6I CTCTTC 2 cut(s) 143, 194
BstBAI YACGTR 2 cut(s) 178, 262
BstDEI CTNAG 2 cut(s) 299, 450
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 15, 53
BstKTI GATC 3 cut(s) 16, 279, 502
BstMAI GTCTC 2 cut(s) 84, 302
BstMBI GATC 3 cut(s) 13, 276, 499
BstMCI CGRYCG 1 cut(s) 270
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 187
BstZI CGGCCG 1 cut(s) 267
BsuRI GGCC 3 cut(s) 151, 182, 269
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 15, 53
BtsIMutI CAGTG 2 cut(s) 229, 486
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 133, 181
CviAII CATG 7 cut(s) 26, 31, 40, 58, 103, 169, 337
CviJI RGCY 9 cut(s) 151, 182, 223, 269, 314, 332, 374, 454, 475
CviKI_1 RGCY 9 cut(s) 151, 182, 223, 269, 314, 332, 374, 454, 475
DdeI CTNAG 2 cut(s) 299, 450
DpnI GATC 3 cut(s) 15, 278, 501
DpnII GATC 3 cut(s) 13, 276, 499
EaeI YGGCCR 2 cut(s) 149, 267
EagI CGGCCG 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 143, 194
EarI CTCTTC 2 cut(s) 143, 194
EclXI CGGCCG 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 440
Eco72I CACGTG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
FaqI GGGAC 1 cut(s) 270
FatI CATG 7 cut(s) 25, 30, 39, 57, 102, 168, 336
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 2 cut(s) 22, 40
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 2 cut(s) 378, 479
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 3 cut(s) 151, 182, 269
HapII CCGG 1 cut(s) 270
Hin1II CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
HinfI GANTC 1 cut(s) 237
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 6 cut(s) 26, 144, 255, 280, 493, 503
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 233, 490
HpyCH4IV ACGT 2 cut(s) 177, 261
HpyCH4V TGCA 2 cut(s) 100, 292
HpyF3I CTNAG 2 cut(s) 299, 450
HpySE526I ACGT 2 cut(s) 177, 261
Hsp92II CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
Kzo9I GATC 3 cut(s) 13, 276, 499
LweI GCATC 1 cut(s) 87
MaeII ACGT 2 cut(s) 177, 261
MalI GATC 3 cut(s) 15, 278, 501
MboI GATC 3 cut(s) 13, 276, 499
MboII GAAGA 5 cut(s) 85, 103, 130, 181, 187
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 151
MnlI CCTC 6 cut(s) 124, 146, 194, 197, 212, 296
Mox20I TGGCCA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 1 cut(s) 151
MseI TTAA 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 151
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 39
NdeII GATC 3 cut(s) 13, 276, 499
NlaIII CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
NlaIV GGNNCC 3 cut(s) 37, 45, 157
NmeAIII GCCGAG 1 cut(s) 154
NspI RCATGY 1 cut(s) 172
PagI TCATGA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 488
PkrI GCNGC 1 cut(s) 268
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
Ppu21I YACGTR 2 cut(s) 178, 262
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 151
PspCI CACGTG 1 cut(s) 262
PspFI CCCAGC 2 cut(s) 374, 475
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 37, 45, 157
PspPI GGNCC 2 cut(s) 133, 181
PspPPI RGGWCCY 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 13, 276, 499
Sau96I GGNCC 2 cut(s) 133, 181
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 122
SetI ASST 7 cut(s) 110, 135, 180, 249, 264, 430, 456
SfaNI GCATC 1 cut(s) 87
SinI GGWCC 1 cut(s) 133
SsiI CCGC 3 cut(s) 50, 126, 266
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 233, 490
TaiI ACGT 2 cut(s) 180, 264
TaqI TCGA 2 cut(s) 216, 235
TaqII GACCGA 1 cut(s) 539
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 236, 493
TspDTI ATGAA 3 cut(s) 74, 503, 507
TspRI CASTG 2 cut(s) 236, 493
Tth111I GACNNNGTC 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 133
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.