RLG00000035901

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011018
Physical Location & Seq
Reverse (-)
73199796 .. 73200266
471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035901

Sequence Viewer

Length: 471 bp
ATGGAAGGAATGGATCATAGTCATCATGACATGGGTTCCATGGCACCACCGCCATCCATGAACGGCGCAACGAAGATGCCTCACCAGAAAATGATGATGCACATGACCTTCTTCTGGGGCACAACCGCGGAGGTCCTCTTCTCCAGATGGCCAGGCACCAACACTGGCATGTATTACGTGGCCCTGCTCTTCGTCTTCGCCCTCGCTGTTCTCGTCGAGTGGCTCTCCCACTGTCGAATCATCAAGGTCGGGTCGCGACACGTGGCAGCCGGACTGATCCAGACCCTCTTGCATTGTCTGAGGGTCGGGTTGGCTTATATGGTAATGTTGGCTGTCATGTCCTTTAATGCTGGTGTGTTTTTGGTTGCTGTGGCTGGGCATACTTTGGGGTTCTTGCTCTTTGGGAGTAGGGTTTTCAGGAAACCTGTGGAGGATGAAAAGGGCTCTGATCTTCCTCCAATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

157

Amino Acids

17.26

Weight (kDa)

8.55

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 35 - 79 3.7e-08 Ctr copper transporter family
Ctr PF04145 89 - 134 1.7e-10 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 155
AccII CGCG 2 cut(s) 128, 256
AciI CCGC 3 cut(s) 50, 126, 128
AclWI GGATC 2 cut(s) 21, 271
AcoI YGGCCR 1 cut(s) 149
AcvI CACGTG 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 259
AjnI CCWGG 1 cut(s) 151
AlwI GGATC 2 cut(s) 21, 271
AoxI GGCC 2 cut(s) 149, 180
ApeKI GCWGC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 133, 181
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 151
BanI GGYRCC 2 cut(s) 43, 155
BanII GRGCYC 1 cut(s) 446
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 61, 141
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 153
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 181
BmiI GGNNCC 3 cut(s) 37, 45, 157
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 66, 87
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 178, 262
BsaJI CCNNGG 2 cut(s) 39, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 39, 126
BseGI GGATG 2 cut(s) 53, 439
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 374
Bsh1236I CGCG 2 cut(s) 128, 256
BshFI GGCC 2 cut(s) 151, 182
BshNI GGYRCC 2 cut(s) 43, 155
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 2 cut(s) 151, 182
Bsp1286I GDGCHC 2 cut(s) 122, 446
Bsp143I GATC 3 cut(s) 13, 276, 448
Bsp19I CCATGG 1 cut(s) 39
Bsp68I TCGCGA 1 cut(s) 256
BspACI CCGC 3 cut(s) 50, 126, 128
BspANI GGCC 2 cut(s) 151, 182
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 2 cut(s) 128, 256
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 37, 45, 157
BspPI GGATC 2 cut(s) 21, 271
BspQI GCTCTTC 1 cut(s) 194
BspT107I GGYRCC 2 cut(s) 43, 155
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 39, 126
BssMI GATC 3 cut(s) 13, 276, 448
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 143, 194
BstBAI YACGTR 2 cut(s) 178, 262
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 2 cut(s) 39, 126
BstF5I GGATG 2 cut(s) 53, 439
BstFNI CGCG 2 cut(s) 128, 256
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 3 cut(s) 16, 279, 451
BstMBI GATC 3 cut(s) 13, 276, 448
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 2 cut(s) 128, 256
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 151, 182
BtgI CCRYGG 2 cut(s) 39, 126
BtsCI GGATG 2 cut(s) 53, 439
BtsIMutI CAGTG 2 cut(s) 162, 229
BtuMI TCGCGA 1 cut(s) 256
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 133, 181
Cfr42I CCGCGG 1 cut(s) 129
CviAII CATG 7 cut(s) 26, 31, 40, 58, 103, 169, 337
CviJI RGCY 8 cut(s) 151, 182, 223, 269, 314, 332, 374, 444
CviKI_1 RGCY 8 cut(s) 151, 182, 223, 269, 314, 332, 374, 444
DdeI CTNAG 1 cut(s) 299
DpnI GATC 3 cut(s) 15, 278, 450
DpnII GATC 3 cut(s) 13, 276, 448
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 143, 194
EarI CTCTTC 2 cut(s) 143, 194
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
FatI CATG 7 cut(s) 25, 30, 39, 57, 102, 168, 336
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 2 cut(s) 40, 446
FriOI GRGCYC 1 cut(s) 446
Fsp4HI GCNGC 1 cut(s) 267
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 2 cut(s) 151, 182
HapII CCGG 1 cut(s) 270
HhaI GCGC 1 cut(s) 68
Hin1II CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 237
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 300, 448
Hpy188III TCNNGA 5 cut(s) 26, 144, 255, 280, 418
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 2 cut(s) 177, 261
HpyCH4V TGCA 2 cut(s) 100, 292
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 2 cut(s) 177, 261
Hsp92II CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
HspAI GCGC 1 cut(s) 66
KspI CCGCGG 1 cut(s) 129
Kzo9I GATC 3 cut(s) 13, 276, 448
LguI GCTCTTC 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 66, 87
MaeII ACGT 2 cut(s) 177, 261
MalI GATC 3 cut(s) 15, 278, 450
MboI GATC 3 cut(s) 13, 276, 448
MboII GAAGA 6 cut(s) 85, 103, 130, 181, 187, 443
MhlI GDGCHC 2 cut(s) 122, 446
MlsI TGGCCA 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 151
MnlI CCTC 8 cut(s) 90, 124, 146, 212, 294, 296, 424, 465
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 2 cut(s) 128, 256
NcoI CCATGG 1 cut(s) 39
NdeII GATC 3 cut(s) 13, 276, 448
NlaIII CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 340
NlaIV GGNNCC 3 cut(s) 37, 45, 157
NruI TCGCGA 1 cut(s) 256
NspI RCATGY 1 cut(s) 172
PagI TCATGA 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 268
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
Ppu21I YACGTR 2 cut(s) 178, 262
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 151
PspCI CACGTG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 37, 45, 157
PspPI GGNCC 2 cut(s) 133, 181
PspPPI RGGWCCY 1 cut(s) 133
RruI TCGCGA 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 167
SacII CCGCGG 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 13, 276, 448
Sau96I GGNCC 2 cut(s) 133, 181
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 2 cut(s) 122, 446
SetI ASST 6 cut(s) 110, 135, 180, 249, 264, 427
SfaNI GCATC 2 cut(s) 66, 87
Sfr303I CCGCGG 1 cut(s) 129
SgrBI CCGCGG 1 cut(s) 129
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 167
SsiI CCGC 3 cut(s) 50, 126, 128
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 2 cut(s) 180, 264
TaqI TCGA 2 cut(s) 216, 235
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 169, 236
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 74, 450
TspRI CASTG 2 cut(s) 169, 236
VpaK11BI GGWCC 1 cut(s) 133
XceI RCATGY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.