Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011018

Physical Location & Seq

Genomic Coordinates Forward (+)

17268700 .. 17269510

Gene Structure 811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGATCATGATCACATGCATGACATGCCACCACCATCACCATCATCATCATCGATGTCGAATCATACAACACCACACATGATGATGATGCACATGACCTTCTTTTGGGGTAAGAACACGGAGGTTCTCTTCTCCGGATGGCCCGGGACAAGCTCCGGCATGTACGCTCTCTGTCTCATTGTTATATTCCTCCTCGCCGTAATTGCCGAGTGGCTCGCTCATTCACCGATCCTACGTGTCAGTGGCTCAACCAATCGAGCCGCCGGGCTCGCTCAAACCGCTGTGTACACACTCAAGACTGGCCTTTCGTATTTGGTGATGCTCGCTGTTATGTCCTTTAACGCAGGTGTTTTCATCGTCGCTATCGCCGGCTATGGCGTTGGTTTCTTTCTCTTTGGGAGCACTACTTTCAAGAAACCCTCCGATGACCAGAAAACCGCCGAGCTTCTTCCGCCGTCTTCAGGCTGCGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015089 GO:0015318 GO:0015677 GO:0015679 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0046658 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098705 GO:0098739 GO:0099402 GO:0099587

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

158

Amino Acids

17.06

Weight (kDa)

6.63

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	32 - 73	2.1e-08	Ctr copper transporter family
Ctr	PF04145	85 - 132	1.3e-10	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26975 AT3G46900 AT5G59030
fragaria_vesca	FvH4_3g37240
malus_domestica	MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica	Prupe.6G066900_v2.0.a1
pyrus_communis	pycom11g07530 pycom11g07540
rosa_chinensis	RchiOBHm_Chr5g0066991
rosa_laevigata	RLG00000035901
rosa_multiflora	Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014120
rosa_rugosa	Rorug05G0380600
rosa_samantha	Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana	Rw5G041170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	4 cut(s)	261, 279, 438, 452
AclWI	GGATC	2 cut(s)	12, 223
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	164, 287
AfiI	CCNNNNNNNGG	2 cut(s)	105, 461
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	412
AluBI	AGCT	2 cut(s)	153, 445
AluI	AGCT	2 cut(s)	153, 445
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	12, 223
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	2 cut(s)	140, 301
ApeKI	GCWGC	1 cut(s)	465
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	3 cut(s)	144, 145, 265
AsuHPI	GGTGA	3 cut(s)	30, 216, 328
AvaI	CYCGRG	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	3 cut(s)	43, 49, 132
BceAI	ACGGC	2 cut(s)	182, 439
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	3 cut(s)	144, 145, 265
BcoDI	GTCTC	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	261, 466
BlsI	GCNGC	2 cut(s)	262, 467
Bme1390I	CCNGG	3 cut(s)	144, 145, 265
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	141
BmrFI	CCNGG	3 cut(s)	144, 145, 265
BmsI	GCATC	2 cut(s)	78, 309
BpiI	GAAGAC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	3 cut(s)	144, 145, 265
Bsa29I	ATCGAT	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 461
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	143
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	105, 461
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	452
BshFI	GGCC	2 cut(s)	142, 303
BshVI	ATCGAT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	5 cut(s)	135, 144, 156, 264, 369
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	105, 461
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	142, 303
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	270, 404
Bsp13I	TCCGGA	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	4, 10, 228
BspACI	CCGC	4 cut(s)	261, 279, 438, 452
BspANI	GGCC	2 cut(s)	142, 303
BspDI	ATCGAT	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	12, 223
BsrFI	RCCGGY	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	3 cut(s)	4, 10, 228
Bst6I	CTCTTC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	4 cut(s)	216, 270, 324, 370
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	3 cut(s)	7, 13, 231
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	4, 10, 228
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 203, 269, 278, 451
BstNSI	RCATGY	3 cut(s)	19, 28, 163
BstSCI	CCNGG	3 cut(s)	142, 143, 263
BstV1I	GCAGC	1 cut(s)	452
BstV2I	GAAGAC	1 cut(s)	450
Bsu15I	ATCGAT	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	142, 303
BsuTUI	ATCGAT	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	247
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	4 cut(s)	216, 270, 324, 370
CciI	TCATGA	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	141
Cfr9I	CCCGGG	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	163, 286
CviAII	CATG	7 cut(s)	8, 16, 20, 25, 79, 94, 160
CviQI	GTAC	2 cut(s)	163, 286
DpnI	GATC	3 cut(s)	6, 12, 230
DpnII	GATC	3 cut(s)	4, 10, 228
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	7 cut(s)	11, 19, 23, 28, 82, 97, 163
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	7 cut(s)	7, 15, 19, 24, 78, 93, 159
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	261, 466
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	261, 466
GluI	GCNGC	2 cut(s)	261, 466
HaeIII	GGCC	2 cut(s)	142, 303
HapII	CCGG	5 cut(s)	135, 144, 156, 264, 369
Hin1II	CATG	7 cut(s)	11, 19, 23, 28, 82, 97, 163
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	5 cut(s)	135, 144, 156, 264, 369
HphI	GGTGA	3 cut(s)	30, 216, 328
Hpy166II	GTNNAC	2 cut(s)	286, 288
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	8, 135, 295, 412
Hpy8I	GTNNAC	2 cut(s)	286, 288
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	19, 91
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 203, 269, 278, 451
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	7 cut(s)	11, 19, 23, 28, 82, 97, 163
Kpn2I	TCCGGA	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	4, 10, 228
LmnI	GCTCC	2 cut(s)	158, 399
LpnPI	CCDG	9 cut(s)	148, 157, 169, 277, 285, 330, 382, 443, 447
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	2 cut(s)	78, 309
MaeII	ACGT	1 cut(s)	235
MalI	GATC	3 cut(s)	6, 12, 230
MboI	GATC	3 cut(s)	4, 10, 228
MboII	GAAGA	3 cut(s)	121, 440, 450
MhlI	GDGCHC	2 cut(s)	270, 404
MluCI	AATT	1 cut(s)	201
MnlI	CCTC	4 cut(s)	115, 200, 203, 430
Mph1103I	ATGCAT	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	134
MroNI	GCCGGC	1 cut(s)	368
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	18, 83
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	5 cut(s)	135, 144, 156, 264, 369
MspR9I	CCNGG	3 cut(s)	144, 145, 265
MwoI	GCNNNNNNNGC	5 cut(s)	25, 203, 269, 278, 451
NaeI	GCCGGC	1 cut(s)	370
NciI	CCSGG	3 cut(s)	144, 145, 265
NdeII	GATC	3 cut(s)	4, 10, 228
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	7 cut(s)	11, 19, 23, 28, 82, 97, 163
NmeAIII	GCCGAG	2 cut(s)	232, 466
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	3 cut(s)	19, 28, 163
PagI	TCATGA	1 cut(s)	7
PaqCI	CACCTGC	1 cut(s)	335
PdiI	GCCGGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	262, 467
Ppu21I	YACGTR	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	141
RsaI	GTAC	2 cut(s)	164, 287
RsaNI	GTAC	2 cut(s)	163, 286
RseI	CAYNNNNRTG	2 cut(s)	18, 83
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	261, 466
Sau3AI	GATC	3 cut(s)	4, 10, 228
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	3 cut(s)	144, 145, 265
SduI	GDGCHC	2 cut(s)	270, 404
SetI	ASST	6 cut(s)	101, 126, 155, 238, 349, 447
SfaNI	GCATC	2 cut(s)	78, 309
SmaI	CCCGGG	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	18, 83
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	4 cut(s)	261, 279, 438, 452
StyD4I	CCNGG	3 cut(s)	142, 143, 263
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	53, 59, 256
TasI	AATT	1 cut(s)	201
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	1 cut(s)	343
TspGWI	ACGGA	1 cut(s)	134
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	1 cut(s)	247
XceI	RCATGY	3 cut(s)	19, 28, 163
XmaI	CCCGGG	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.