pycom11g07530

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011018
Physical Location & Seq
Forward (+)
5799607 .. 5800215
609 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07530.1

Sequence Viewer

Length: 609 bp
ATGCGGACGAGAGAGCCCTCACTCATTTCAACACCCCAACAGAAGCAAATTTTAGAGAGAGAATTTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAATGGTATGGATCACGGCCATGGCTTGGGTGGCATGGAATCACTGCCGCCACTATCGTCATCCATGACGAACGGCACGATGATGATGCACCATAAGATGATGATGCACATGACCTTCTTTTGGGGCACAAAGGCGGAAGTCCTCTTCTCCAAATGGCCAGGCACAAACACCGGTATGTATTACGTATCCCTACTCTTTGTCTTTGCCCTAGCGGTCCTCGTCGAGTGGCTCTCCCACTGCCGTCTGATCAGGGCCGGCGGAAGCGACGTCGTTTGTGGACTGGCTCAGACTCTTTTGCATGCAGTTAGGGTTGGGTTGGCTTATTTGGTGATGTTGGCGGTCATGTCGTTTAATGCTGGGGTGTTTCTTGTGGCGGTGGCCGGGCATACTGTCGGGTTTTTGCTTTTTGGGAGTAGGGTTTTTAAGAAGAAATCGGATGTTGATGATAAGGGTTCTGATCTTCCTCCAATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

203

Amino Acids

22.85

Weight (kDa)

8.5

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 80 - 124 4e-09 Ctr copper transporter family
Ctr PF04145 137 - 179 3.5e-10 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 399
AccB7I CCANNNNNTGG 1 cut(s) 154
AciI CCGC 7 cut(s) 4, 176, 263, 341, 387, 467, 503
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 3 cut(s) 145, 284, 507
AcsI RAATTY 2 cut(s) 48, 62
AcyI GRCGYC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 154, 249
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 1 cut(s) 30
AjnI CCWGG 1 cut(s) 286
AlwI GGATC 1 cut(s) 147
AoxI GGCC 4 cut(s) 145, 284, 381, 507
ApoI RAATTY 2 cut(s) 48, 62
AsiGI ACCGGT 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 343, 381
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 286
BanII GRGCYC 1 cut(s) 18
BceAI ACGGC 3 cut(s) 160, 217, 354
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 511
BfaI CTAG 1 cut(s) 338
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 288, 511
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 343, 381
BmrFI CCNGG 2 cut(s) 288, 511
BmsI GCATC 2 cut(s) 204, 222
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpuMI CCSGG 1 cut(s) 511
BsaAI YACGTR 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 249
Bse118I RCCGGY 2 cut(s) 299, 383
Bse1I ACTGG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 188, 571
BseLI CCNNNNNNNGG 2 cut(s) 154, 249
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 414
BseSI GKGCMC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 485
BshFI GGCC 4 cut(s) 147, 286, 383, 509
BshTI ACCGGT 1 cut(s) 299
BsiSI CCGG 3 cut(s) 300, 384, 510
BslI CCNNNNNNNGG 2 cut(s) 154, 249
BsnI GGCC 4 cut(s) 147, 286, 383, 509
Bsp1286I GDGCHC 2 cut(s) 18, 257
Bsp143I GATC 3 cut(s) 139, 375, 586
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 7 cut(s) 4, 176, 263, 341, 387, 467, 503
BspANI GGCC 4 cut(s) 147, 286, 383, 509
BspCNI CTCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 147
BsrFI RCCGGY 2 cut(s) 299, 383
BsrI ACTGG 1 cut(s) 414
BssAI RCCGGY 2 cut(s) 299, 383
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 3 cut(s) 139, 375, 586
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 385, 429
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 2 cut(s) 188, 571
BstKTI GATC 3 cut(s) 142, 378, 589
BstMBI GATC 3 cut(s) 139, 375, 586
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 286, 509
BstSLI GKGCMC 1 cut(s) 257
BstSNI TACGTA 1 cut(s) 313
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 4 cut(s) 147, 286, 383, 509
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 2 cut(s) 188, 571
BtsI GCAGTG 2 cut(s) 170, 364
BtsIMutI CAGTG 2 cut(s) 170, 364
Cac8I GCNNGC 2 cut(s) 385, 429
Cfr10I RCCGGY 2 cut(s) 299, 383
Cfr13I GGNCC 2 cut(s) 343, 381
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 6 cut(s) 149, 163, 193, 238, 428, 472
CviJI RGCY 9 cut(s) 16, 147, 153, 286, 358, 383, 413, 449, 509
CviKI_1 RGCY 9 cut(s) 16, 147, 153, 286, 358, 383, 413, 449, 509
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 141, 377, 588
DpnII GATC 3 cut(s) 139, 375, 586
EaeI YGGCCR 3 cut(s) 145, 284, 507
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 2 cut(s) 278, 402
Eco105I TACGTA 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 6 cut(s) 152, 166, 196, 241, 431, 475
FatI CATG 6 cut(s) 148, 162, 192, 237, 427, 471
FbaI TGATCA 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 2 cut(s) 175, 578
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 338
GluI GCNGC 1 cut(s) 176
GsaI CCCAGC 1 cut(s) 489
HaeIII GGCC 4 cut(s) 147, 286, 383, 509
HapII CCGG 3 cut(s) 300, 384, 510
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 6 cut(s) 152, 166, 196, 241, 431, 475
HinfI GANTC 2 cut(s) 167, 418
HpaII CCGG 3 cut(s) 300, 384, 510
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 5 cut(s) 70, 375, 417, 565, 586
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 3 cut(s) 353, 398, 401
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 2 cut(s) 312, 396
HpyCH4V TGCA 4 cut(s) 217, 235, 427, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 2 cut(s) 312, 396
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 6 cut(s) 152, 166, 196, 241, 431, 475
KroI GCCGGC 1 cut(s) 383
KroNI GCCGGC 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 3 cut(s) 139, 375, 586
LpnPI CCDG 8 cut(s) 273, 300, 313, 364, 395, 397, 471, 523
LweI GCATC 2 cut(s) 204, 222
MaeI CTAG 1 cut(s) 338
MaeII ACGT 2 cut(s) 312, 396
MalI GATC 3 cut(s) 141, 377, 588
MboI GATC 3 cut(s) 139, 375, 586
MboII GAAGA 3 cut(s) 265, 568, 581
MhlI GDGCHC 2 cut(s) 18, 257
MlsI TGGCCA 1 cut(s) 286
MluCI AATT 2 cut(s) 48, 62
MluNI TGGCCA 1 cut(s) 286
MlyI GAGTC 1 cut(s) 412
MnlI CCTC 4 cut(s) 28, 281, 356, 603
Mox20I TGGCCA 1 cut(s) 286
MroNI GCCGGC 1 cut(s) 383
MscI TGGCCA 1 cut(s) 286
MseI TTAA 2 cut(s) 480, 552
MslI CAYNNNNRTG 3 cut(s) 147, 209, 302
Msp20I TGGCCA 1 cut(s) 286
MspI CCGG 3 cut(s) 300, 384, 510
MspR9I CCNGG 2 cut(s) 288, 511
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 159
NaeI GCCGGC 1 cut(s) 385
NciI CCSGG 1 cut(s) 511
NcoI CCATGG 1 cut(s) 148
NdeII GATC 3 cut(s) 139, 375, 586
NgoMIV GCCGGC 1 cut(s) 383
NlaIII CATG 6 cut(s) 152, 166, 196, 241, 431, 475
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 2 cut(s) 343, 381
RseI CAYNNNNRTG 3 cut(s) 147, 209, 302
SaqAI TTAA 2 cut(s) 480, 552
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 3 cut(s) 139, 375, 586
Sau96I GGNCC 2 cut(s) 343, 381
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 2 cut(s) 288, 511
SduI GDGCHC 2 cut(s) 18, 257
SetI ASST 3 cut(s) 245, 315, 399
SfaNI GCATC 2 cut(s) 204, 222
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 3 cut(s) 147, 209, 302
SnaBI TACGTA 1 cut(s) 313
SphI GCATGC 1 cut(s) 431
Sse9I AATT 2 cut(s) 48, 62
SsiI CCGC 7 cut(s) 4, 176, 263, 341, 387, 467, 503
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 286, 509
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 2 cut(s) 315, 399
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 48, 62
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 480, 552
Tru9I TTAA 2 cut(s) 480, 552
TscAI CASTG 2 cut(s) 177, 371
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 2 cut(s) 177, 371
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 2 cut(s) 48, 62
XceI RCATGY 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XspI CTAG 1 cut(s) 338
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.