MD03G1082600.v1.1

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011018
Physical Location & Seq
Forward (+)
6690831 .. 6691304
474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1082600.v1.1.491

Sequence Viewer

Length: 474 bp
ATGGAAGGGATGGATCATGGCCATGGCATGGGTGGTATGGCACCACCACCACCATCATCCATGACGAACGGTACGACGATGCACCATACGATGATGATGCACATGACCTTCTTTTGGGGCACAAAGGCGGAAGTACTCTTCTCCAAATGGCCAGGCACAAACACCGGCATGTATTACGTATCCTTATTCTTTGTCTTTGCCCTAGCTGTCCTCGTCGAGTGGCTCTCCCACTGCCGTCTGATCAGACCCAGCGCAAGCGACGTCATTTCTGGACTGGCACAGACTTTTTTGCATGCAATTAGGGTTGGGTTGGCTTATTTGGTGATGTTGGCCGTCATGTCGTTTAATGCGGGGGTGTTTCTTGTGGCGGTGGCTGGGCATACTGTTGGGTTCTTGCTTTTTGGGAGTAGGGTTTTTAAGAAGAAGCCGGATGTTGATGAAAAGGGTTCTGATCTTCCTCCAATGAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

158

Amino Acids

17.22

Weight (kDa)

8.67

Isoelectric Point (pI)

24.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 35 - 79 2e-09 Ctr copper transporter family
Ctr PF04145 85 - 134 5.1e-11 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 3 cut(s) 128, 350, 368
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 3 cut(s) 19, 149, 330
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 73, 135
AfiI CCNNNNNNNGG 2 cut(s) 28, 114
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwI GGATC 1 cut(s) 21
AoxI GGCC 3 cut(s) 19, 149, 330
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 2 cut(s) 21, 151
BanI GGYRCC 1 cut(s) 40
BccI CCATC 2 cut(s) 4, 61
BceAI ACGGC 2 cut(s) 219, 317
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 190
BclI TGATCA 1 cut(s) 240
BfaI CTAG 1 cut(s) 203
BfuI GTATCC 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 69, 87
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BsaAI YACGTR 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 114
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 15, 56, 436
BseLI CCNNNNNNNGG 2 cut(s) 28, 114
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 122
BseYI CCCAGC 2 cut(s) 248, 374
BshFI GGCC 3 cut(s) 21, 151, 332
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 2 cut(s) 165, 428
BslI CCNNNNNNNGG 2 cut(s) 28, 114
BsnI GGCC 3 cut(s) 21, 151, 332
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 13, 240, 451
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 3 cut(s) 128, 350, 368
BspANI GGCC 3 cut(s) 21, 151, 332
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 13, 240, 451
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 71, 385
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 256, 294
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 15, 56, 436
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 16, 243, 454
BstMBI GATC 3 cut(s) 13, 240, 451
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 2 cut(s) 172, 296
BstSCI CCNGG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 122
BstSNI TACGTA 1 cut(s) 178
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 3 cut(s) 21, 151, 332
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 3 cut(s) 15, 56, 436
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 256, 294
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 164
Csp6I GTAC 2 cut(s) 72, 134
CviAII CATG 8 cut(s) 17, 23, 28, 61, 103, 169, 293, 337
CviJI RGCY 8 cut(s) 21, 151, 206, 223, 314, 332, 374, 427
CviKI_1 RGCY 8 cut(s) 21, 151, 206, 223, 314, 332, 374, 427
CviQI GTAC 2 cut(s) 72, 134
DpnI GATC 3 cut(s) 15, 242, 453
DpnII GATC 3 cut(s) 13, 240, 451
EaeI YGGCCR 3 cut(s) 19, 149, 330
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 143
Eco105I TACGTA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 8 cut(s) 20, 26, 31, 64, 106, 172, 296, 340
FatI CATG 8 cut(s) 16, 22, 27, 60, 102, 168, 292, 336
FauI CCCGC 1 cut(s) 343
FbaI TGATCA 1 cut(s) 240
FokI GGATG 3 cut(s) 22, 43, 443
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 253
GsaI CCCAGC 2 cut(s) 252, 378
HaeIII GGCC 3 cut(s) 21, 151, 332
HapII CCGG 2 cut(s) 165, 428
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 8 cut(s) 20, 26, 31, 64, 106, 172, 296, 340
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HpaII CCGG 2 cut(s) 165, 428
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 240, 245, 451
Hpy188III TCNNGA 1 cut(s) 270
Hpy99I CGWCG 3 cut(s) 79, 218, 263
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 71, 385
HpyCH4IV ACGT 2 cut(s) 177, 261
HpyCH4V TGCA 4 cut(s) 82, 100, 292, 296
HpySE526I ACGT 2 cut(s) 177, 261
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 8 cut(s) 20, 26, 31, 64, 106, 172, 296, 340
HspAI GCGC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 13, 240, 451
LpnPI CCDG 8 cut(s) 138, 165, 178, 255, 260, 262, 360, 441
LweI GCATC 2 cut(s) 69, 87
MaeI CTAG 1 cut(s) 203
MaeII ACGT 2 cut(s) 177, 261
MalI GATC 3 cut(s) 15, 242, 453
MboI GATC 3 cut(s) 13, 240, 451
MboII GAAGA 3 cut(s) 130, 433, 446
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 2 cut(s) 21, 151
MluCI AATT 1 cut(s) 297
MluNI TGGCCA 2 cut(s) 21, 151
MnlI CCTC 2 cut(s) 221, 468
Mox20I TGGCCA 2 cut(s) 21, 151
MscI TGGCCA 2 cut(s) 21, 151
MseI TTAA 2 cut(s) 345, 417
MslI CAYNNNNRTG 2 cut(s) 21, 167
Msp20I TGGCCA 2 cut(s) 21, 151
MspI CCGG 2 cut(s) 165, 428
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 22
NdeII GATC 3 cut(s) 13, 240, 451
NlaIII CATG 8 cut(s) 20, 26, 31, 64, 106, 172, 296, 340
NlaIV GGNNCC 1 cut(s) 42
NspI RCATGY 2 cut(s) 172, 296
PaeI GCATGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 2 cut(s) 248, 374
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 73, 135
RsaNI GTAC 2 cut(s) 72, 134
RseI CAYNNNNRTG 2 cut(s) 21, 167
SaqAI TTAA 2 cut(s) 345, 417
Sau3AI GATC 3 cut(s) 13, 240, 451
ScaI AGTACT 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 122
SetI ASST 4 cut(s) 110, 180, 208, 264
SfaNI GCATC 2 cut(s) 69, 87
SmiMI CAYNNNNRTG 2 cut(s) 21, 167
SnaBI TACGTA 1 cut(s) 178
SphI GCATGC 1 cut(s) 296
Sse9I AATT 1 cut(s) 297
SsiI CCGC 3 cut(s) 128, 350, 368
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 71, 385
TaiI ACGT 2 cut(s) 180, 264
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 133
Tru1I TTAA 2 cut(s) 345, 417
Tru9I TTAA 2 cut(s) 345, 417
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 28
XceI RCATGY 2 cut(s) 172, 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XspI CTAG 1 cut(s) 203
ZraI GACGTC 1 cut(s) 262
ZrmI AGTACT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.