Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011018

Physical Location & Seq

Genomic Coordinates Reverse (-)

23833493 .. 23834745

Gene Structure 1253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATCATGATCACATGCATGGAATGCCTCGACCATCATCATCATCATCATCATCACCATCATCCATGATGAACAATGGATCCATGAACGAAGGAGGAGGACATCACCACATGAAGATGATGATGCACATGACCTTCTTTTGGGGCAAGAACACGGAGGTTCTCTTCTCCGGTTGGCCCGGAACAAGCTCCGGCATGTATGCTCTTTGTCTTATCTTTGTCTTCTTTCTCGCCGTCCTCACCGAATGGCTTGCTCATTCCTCTCTCCTCCGTGGCTCCACCGGAGATTCGGCTAATCGTGCCGCCGGGTTAATCCAAACCGCCGTGTATACCCTCCGTATCGGCCTCGCCTATCTAGTCATGCTCGCCGTCATGTCGTTTAACGCCGGTGTGTTTCTCGTCGCTCTGGCCGGTCATGCCGTTGGTTTCATGTTGTTCGGAAGCCAAACTTTCCGGAATACCTCCGATGACCGGAAAACTAACTATGTTCCTCCCTCAGGTTGTGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015089 GO:0015318 GO:0015677 GO:0015679 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0046658 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098705 GO:0098739 GO:0099402 GO:0099587

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

170

Amino Acids

18.4

Weight (kDa)

7.85

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	44 - 85	5.3e-09	Ctr copper transporter family
Ctr	PF04145	98 - 146	8.6e-10	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26975 AT3G46900 AT5G59030
fragaria_vesca	FvH4_3g37240
malus_domestica	MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica	Prupe.6G066900_v2.0.a1
pyrus_communis	pycom11g07530 pycom11g07540
rosa_chinensis	RchiOBHm_Chr5g0066991
rosa_laevigata	RLG00000035901
rosa_multiflora	Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014120
rosa_rugosa	Rorug05G0380600
rosa_samantha	Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana	Rw5G041170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	453
AciI	CCGC	2 cut(s)	303, 321
AclWI	GGATC	3 cut(s)	12, 75, 88
AcoI	YGGCCR	1 cut(s)	408
AfiI	CCNNNNNNNGG	3 cut(s)	141, 471, 497
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
AlwI	GGATC	3 cut(s)	12, 75, 88
Aor13HI	TCCGGA	1 cut(s)	453
AoxI	GGCC	3 cut(s)	176, 343, 408
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	2 cut(s)	180, 307
AsuHPI	GGTGA	3 cut(s)	48, 98, 232
AxyI	CCTNAGG	1 cut(s)	496
BamHI	GGATCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	214
BccI	CCATC	2 cut(s)	43, 67
BceAI	ACGGC	4 cut(s)	218, 308, 353, 404
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	2 cut(s)	180, 307
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	180, 307
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	82, 277
BmrFI	CCNGG	2 cut(s)	180, 307
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	214
BpuMI	CCSGG	2 cut(s)	180, 307
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	4 cut(s)	170, 281, 453, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 471, 497
Bse118I	RCCGGY	2 cut(s)	386, 410
Bse21I	CCTNAGG	1 cut(s)	496
Bse8I	GATNNNNATC	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	141, 471, 497
BseMII	CTCAG	1 cut(s)	510
BseRI	GAGGAG	2 cut(s)	111, 257
BshFI	GGCC	3 cut(s)	178, 345, 410
BsiSI	CCGG	9 cut(s)	171, 180, 192, 282, 306, 387, 411, 454, 472
BslI	CCNNNNNNNGG	3 cut(s)	141, 471, 497
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	178, 345, 410
Bsp13I	TCCGGA	1 cut(s)	453
Bsp143I	GATC	3 cut(s)	4, 10, 80
BspACI	CCGC	2 cut(s)	303, 321
BspANI	GGCC	3 cut(s)	178, 345, 410
BspCNI	CTCAG	1 cut(s)	509
BspEI	TCCGGA	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	82, 277
BspPI	GGATC	3 cut(s)	12, 75, 88
BsrFI	RCCGGY	2 cut(s)	386, 410
BssAI	RCCGGY	2 cut(s)	386, 410
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	3 cut(s)	4, 10, 80
BssNAI	GTATAC	1 cut(s)	330
Bst1107I	GTATAC	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	252, 366
BstDEI	CTNAG	1 cut(s)	496
BstDSI	CCRYGG	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	7, 13, 83
BstMBI	GATC	3 cut(s)	4, 10, 80
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 299, 416
BstNSI	RCATGY	2 cut(s)	19, 199
BstSCI	CCNGG	2 cut(s)	178, 305
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BstZ17I	GTATAC	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	178, 345, 410
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	252, 366
CciI	TCATGA	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	386, 410
Cfr13I	GGNCC	1 cut(s)	177
CviJI	RGCY	8 cut(s)	178, 189, 250, 276, 293, 345, 410, 444
CviKI_1	RGCY	8 cut(s)	178, 189, 250, 276, 293, 345, 410, 444
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	3 cut(s)	6, 12, 82
DpnII	GATC	3 cut(s)	4, 10, 80
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	21
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	178, 345, 410
HapII	CCGG	9 cut(s)	171, 180, 192, 282, 306, 387, 411, 454, 472
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	9 cut(s)	171, 180, 192, 282, 306, 387, 411, 454, 472
HphI	GGTGA	3 cut(s)	48, 98, 232
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	440, 466
Hpy188III	TCNNGA	2 cut(s)	8, 454
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	86, 145
HpyCH4V	TGCA	2 cut(s)	19, 127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 299, 416
HpyF3I	CTNAG	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	4, 10, 80
LmnI	GCTCC	2 cut(s)	194, 281
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	356
MalI	GATC	3 cut(s)	6, 12, 82
MboI	GATC	3 cut(s)	4, 10, 80
MboII	GAAGA	3 cut(s)	127, 157, 214
MflI	RGATCY	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	453
MseI	TTAA	2 cut(s)	311, 381
MslI	CAYNNNNRTG	2 cut(s)	18, 116
MspI	CCGG	9 cut(s)	171, 180, 192, 282, 306, 387, 411, 454, 472
MspR9I	CCNGG	2 cut(s)	180, 307
Mva1269I	GAATGC	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	25, 299, 416
NciI	CCSGG	2 cut(s)	180, 307
NdeII	GATC	3 cut(s)	4, 10, 80
NlaIV	GGNNCC	2 cut(s)	82, 277
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	19, 199
PagI	TCATGA	1 cut(s)	7
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	82, 277
PspPI	GGNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	18, 116
SaqAI	TTAA	2 cut(s)	311, 381
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	4, 10, 80
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	180, 307
SetI	ASST	5 cut(s)	137, 162, 191, 464, 502
SfaNI	GCATC	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	18, 116
SsiI	CCGC	2 cut(s)	303, 321
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	178, 305
TaqI	TCGA	1 cut(s)	31
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	311, 381
Tru9I	TTAA	2 cut(s)	311, 381
TspDTI	ATGAA	4 cut(s)	86, 101, 128, 418
TspGWI	ACGGA	3 cut(s)	170, 260, 326
XagI	CCTNNNNNAGG	1 cut(s)	495
XceI	RCATGY	2 cut(s)	19, 199
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.