Prupe.6G066900_v2.0.a1

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011018
Physical Location & Seq
Forward (+)
4621797 .. 4622473
677 bp
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UTR
Exon/CDS
Intron
Prupe.6G066900.1

Sequence Viewer

Length: 471 bp
ATGGAAGGTATGGAACATGGGCATATGGGAGTCATGGCATCACCATCATCCATGATGAGCGGCTCAAATGGGATGATGCACCATAAGATGATGATGCACATGACCTTCTTCTGGGGCACGAACGCCGAGGTGCTCTTCTCCAAGTGGCCAGGCTCAAGCACCGGCATGTATTACGTGTGTCTGCTCTTTGTCTTTGCCCTAGCTGTCATCGTCGAGTGGCTGTCTCATTGTCGTTTAATCAAGGCTGGCTCAAGCGACGTCGTTTGTGGACTGGCCCAGACTTTCCTGCATACCATTAGGGTTGGGCTGGCTTATATGGTCATGTTGGCCGTCATGTCGTTTAATGTTGGTGTGTTTCTTGTGGCTGTTGCTGGGCACACTGTTGGGTTCTTGCTGTTTGGGAGTAGGGTTTTCAAGAAACCAGATCCTGAGGATGAAAAGGACTCTGATCTTCCTCCTATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

157

Amino Acids

17.15

Weight (kDa)

6.42

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 146, 327
AcyI GRCGYC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 419
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 3 cut(s) 146, 273, 327
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 33
AxyI CCTNAGG 1 cut(s) 429
BaeGI GKGCMC 2 cut(s) 119, 378
BalI TGGCCA 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 47, 66, 84
BpuEI CTTGAG 2 cut(s) 139, 235
BsaAI YACGTR 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 276
Bse21I CCTNAGG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 3 cut(s) 47, 78, 439
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 276
BseSI GKGCMC 2 cut(s) 119, 378
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 3 cut(s) 148, 275, 329
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 3 cut(s) 148, 275, 329
Bsp1286I GDGCHC 3 cut(s) 119, 135, 378
Bsp143I GATC 2 cut(s) 424, 448
BspACI CCGC 1 cut(s) 60
BspANI GGCC 3 cut(s) 148, 275, 329
BspCNI CTCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 419
BspQI GCTCTTC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 424, 448
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 247, 309
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 3 cut(s) 47, 78, 439
BstKTI GATC 2 cut(s) 427, 451
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 424, 448
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 148
BstSLI GKGCMC 2 cut(s) 119, 378
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 3 cut(s) 148, 275, 329
BtsCI GGATG 3 cut(s) 47, 78, 439
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 2 cut(s) 247, 309
CaiI CAGNNNCTG 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 274
CviAII CATG 7 cut(s) 17, 34, 52, 100, 166, 322, 334
DdeI CTNAG 1 cut(s) 429
DpnI GATC 2 cut(s) 426, 450
DpnII GATC 2 cut(s) 424, 448
EaeI YGGCCR 2 cut(s) 146, 327
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 7 cut(s) 20, 37, 55, 103, 169, 325, 337
FatI CATG 7 cut(s) 16, 33, 51, 99, 165, 321, 333
FauNDI CATATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 3 cut(s) 34, 85, 446
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 61
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 3 cut(s) 148, 275, 329
HapII CCGG 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 7 cut(s) 20, 37, 55, 103, 169, 325, 337
HinfI GANTC 2 cut(s) 30, 443
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 415, 428
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 3 cut(s) 215, 260, 263
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 2 cut(s) 174, 258
HpyCH4V TGCA 3 cut(s) 79, 97, 289
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 2 cut(s) 174, 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 7 cut(s) 20, 37, 55, 103, 169, 325, 337
Kzo9I GATC 2 cut(s) 424, 448
LguI GCTCTTC 1 cut(s) 140
LweI GCATC 3 cut(s) 47, 66, 84
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 174, 258
MalI GATC 2 cut(s) 426, 450
MbiI CCGCTC 1 cut(s) 60
MboI GATC 2 cut(s) 424, 448
MboII GAAGA 3 cut(s) 100, 127, 443
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 3 cut(s) 119, 135, 378
MlsI TGGCCA 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 2 cut(s) 39, 437
MnlI CCTC 3 cut(s) 121, 424, 465
Mox20I TGGCCA 1 cut(s) 148
MscI TGGCCA 1 cut(s) 148
MseI TTAA 2 cut(s) 236, 342
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 148
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 24
NdeII GATC 2 cut(s) 424, 448
NlaIII CATG 7 cut(s) 20, 37, 55, 103, 169, 325, 337
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 38, 437
PpsI GAGTC 2 cut(s) 38, 437
Ppu21I YACGTR 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 236, 342
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 2 cut(s) 424, 448
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 2 cut(s) 39, 437
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 3 cut(s) 119, 135, 378
SetI ASST 6 cut(s) 10, 107, 132, 177, 205, 261
SfaNI GCATC 3 cut(s) 47, 66, 84
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 154, 250
SmoI CTYRAG 2 cut(s) 154, 250
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 2 cut(s) 177, 261
TaqI TCGA 1 cut(s) 213
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 2 cut(s) 236, 342
Tru9I TTAA 2 cut(s) 236, 342
TscAI CASTG 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 450
TspRI CASTG 1 cut(s) 385
XceI RCATGY 1 cut(s) 169
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.