Rh5BG457100

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011018
Physical Location & Seq
Reverse (-)
73070699 .. 73095609
24911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG457100.1

Sequence Viewer

Length: 540 bp
ATGGAAGGGATGGATCATAGTCATCATGACATGGGTTCCATGGCACCACCGCCATCCATGAACGGCACAACGAAGATGTCTCACCAGAAAATGATGATGCACATGACCTTCTTCTGGGGCACAACCGCCGAGGTCCTCTTCTCCAGATGGCCAGGCACCAAAACTGGCATGTATTACCTGGCCCTCCTCTTCGTCTTCGCCCTCGCTGTTCTCGTCGAGTGGCTCTCCCACTGTCGAATCATCAAGGTCGGGTCGGGACACGTGGCGGCCGGACTGATCCAGACCCTCTTGCATTGTCTCAGGGTCGGGTTGGCTTATATGGTTTCCATCATTGTAACCAGCAAAGAGAATGCTCAAAAGGACACTACAAGAAGCGAGGCCAGCAAAAACACCACTTTTGTCAACGCCAAAACTAAAGAATATTATGATTTTCACTTTGCCGTAGTTGGAAGCAAGGGCGGTGAGACTGTAGCCATAGACATTGCAAAAAGCCACAACCGGAGAAATCATGCAAACCATCATAACATTATACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

179

Amino Acids

20.01

Weight (kDa)

9.3

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 35 - 79 1.3e-07 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 155
AciI CCGC 4 cut(s) 50, 126, 266, 459
AclWI GGATC 2 cut(s) 21, 271
AcoI YGGCCR 2 cut(s) 149, 267
AcvI CACGTG 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 259
AjnI CCWGG 2 cut(s) 151, 177
Alw26I GTCTC 3 cut(s) 84, 302, 458
AlwI GGATC 2 cut(s) 21, 271
AoxI GGCC 4 cut(s) 149, 180, 267, 378
AspS9I GGNCC 2 cut(s) 133, 181
AsuHPI GGTGA 2 cut(s) 74, 473
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 151
BanI GGYRCC 2 cut(s) 43, 155
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 187
BccI CCATC 5 cut(s) 4, 61, 141, 335, 525
BceAI ACGGC 2 cut(s) 79, 425
BciT130I CCWGG 2 cut(s) 153, 179
BcoDI GTCTC 3 cut(s) 84, 302, 458
BfmI CTRYAG 1 cut(s) 468
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 153, 179
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 181
BmiI GGNNCC 3 cut(s) 37, 45, 157
BmrFI CCNGG 2 cut(s) 153, 179
BmsI GCATC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 39, 129
BsaWI WCCGGW 1 cut(s) 498
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 153, 179
BseDI CCNNGG 2 cut(s) 39, 129
BseGI GGATG 2 cut(s) 15, 53
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 122
BseX3I CGGCCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 4 cut(s) 151, 182, 269, 380
BshNI GGYRCC 2 cut(s) 43, 155
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 2 cut(s) 270, 499
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 3 cut(s) 84, 302, 458
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 4 cut(s) 151, 182, 269, 380
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 13, 276
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 4 cut(s) 50, 126, 266, 459
BspANI GGCC 4 cut(s) 151, 182, 269, 380
BspCNI CTCAG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 37, 45, 157
BspPI GGATC 2 cut(s) 21, 271
BspT107I GGYRCC 2 cut(s) 43, 155
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 39, 129
BssMI GATC 2 cut(s) 13, 276
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 153, 179
Bst4CI ACNGT 2 cut(s) 233, 469
Bst6I CTCTTC 2 cut(s) 143, 194
BstBAI YACGTR 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 15, 53
BstKTI GATC 2 cut(s) 16, 279
BstMAI GTCTC 3 cut(s) 84, 302, 458
BstMBI GATC 2 cut(s) 13, 276
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNI CCWGG 2 cut(s) 153, 179
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 151, 177
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 187
BstZI CGGCCG 1 cut(s) 267
BsuRI GGCC 4 cut(s) 151, 182, 269, 380
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 15, 53
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 382
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 133, 181
CviAII CATG 7 cut(s) 26, 31, 40, 58, 103, 169, 509
CviJI RGCY 8 cut(s) 151, 182, 223, 269, 314, 380, 473, 492
CviKI_1 RGCY 8 cut(s) 151, 182, 223, 269, 314, 380, 473, 492
DdeI CTNAG 1 cut(s) 299
DpnI GATC 2 cut(s) 15, 278
DpnII GATC 2 cut(s) 13, 276
EaeI YGGCCR 2 cut(s) 149, 267
EagI CGGCCG 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 143, 194
EarI CTCTTC 2 cut(s) 143, 194
EclXI CGGCCG 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 151, 177
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 512
FaqI GGGAC 1 cut(s) 270
FatI CATG 7 cut(s) 25, 30, 39, 57, 102, 168, 508
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 2 cut(s) 22, 40
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 4 cut(s) 151, 182, 269, 380
HapII CCGG 2 cut(s) 270, 499
Hin1II CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 512
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 237
HpaII CCGG 2 cut(s) 270, 499
HphI GGTGA 2 cut(s) 74, 473
Hpy166II GTNNAC 1 cut(s) 403
Hpy188III TCNNGA 4 cut(s) 26, 144, 255, 280
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 233, 469
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 4 cut(s) 100, 292, 485, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 512
Kzo9I GATC 2 cut(s) 13, 276
LweI GCATC 1 cut(s) 87
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 15, 278
MboI GATC 2 cut(s) 13, 276
MboII GAAGA 5 cut(s) 85, 103, 130, 181, 187
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 7 cut(s) 124, 146, 194, 197, 212, 296, 370
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MseI TTAA 1 cut(s) 538
Msp20I TGGCCA 1 cut(s) 151
MspI CCGG 2 cut(s) 270, 499
MspR9I CCNGG 2 cut(s) 153, 179
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 2 cut(s) 153, 179
MwoI GCNNNNNNNGC 1 cut(s) 381
NcoI CCATGG 1 cut(s) 39
NdeII GATC 2 cut(s) 13, 276
NlaIII CATG 7 cut(s) 29, 34, 43, 61, 106, 172, 512
NlaIV GGNNCC 3 cut(s) 37, 45, 157
NmeAIII GCCGAG 1 cut(s) 154
NspI RCATGY 1 cut(s) 172
PagI TCATGA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 268
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 262
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 151, 177
PspCI CACGTG 1 cut(s) 262
PspGI CCWGG 2 cut(s) 151, 177
PspN4I GGNNCC 3 cut(s) 37, 45, 157
PspPI GGNCC 2 cut(s) 133, 181
PspPPI RGGWCCY 1 cut(s) 133
SaqAI TTAA 1 cut(s) 538
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 13, 276
Sau96I GGNCC 2 cut(s) 133, 181
ScrFI CCNGG 2 cut(s) 153, 179
SduI GDGCHC 1 cut(s) 122
SetI ASST 5 cut(s) 110, 135, 180, 249, 264
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 1 cut(s) 133
SsiI CCGC 4 cut(s) 50, 126, 266, 459
SspI AATATT 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 151, 177
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 233, 469
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 216, 235
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 538
Tru9I TTAA 1 cut(s) 538
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 133
XceI RCATGY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.