FvH4_3g37240

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011018
Physical Location & Seq
Reverse (-)
31910630 .. 31911519
890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37240.t1

Sequence Viewer

Length: 471 bp
ATGGAAGGTATGGATCATGGTAATCATGACATGGGTTCCATGGCACCACCGCCATCCATGGACGGCACGACGATGATGCCTCGCCGGAAAATGATGATGCACATGACCTTCTTCTGGGGCACAGCCGCCGAGATCCTCTTTTCCAAATGGCCAGGCACCAACACCGGCATGTATTACGTGGCACTACTCTTCGTCTTCGCCCTCGCTGTCCTCGTCGAGTGGCTCTCCCATTGTCGAATCCTCAAGGCCGGCTCCGGACACGTGGCAGCCGGACTGGTGCAGACCCTGTTGCACTGTCTCAGGGTCGGGCTGGGTTATATGGTAATGTTGGCTGTCATGTCGTTTAATGCTGGTGTGTTTTTGGTTGCTGTGGCTGGGCATACTTTGGGGTTCTTCTTGTTTGGGAGTAGGGTTTTTAGGAAATCTGTGGAGGATGAGAAGAACTCTGATCTTCCTCCAATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

157

Amino Acids

17.17

Weight (kDa)

7.82

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 35 - 79 2.3e-08 Ctr copper transporter family
Ctr PF04145 92 - 134 2.3e-10 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 155
AccIII TCCGGA 1 cut(s) 254
AciI CCGC 2 cut(s) 50, 126
AclWI GGATC 2 cut(s) 21, 127
AcoI YGGCCR 1 cut(s) 149
AcvI CACGTG 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 259
AjnI CCWGG 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 2 cut(s) 21, 127
AlwNI CAGNNNCTG 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 254
AoxI GGCC 2 cut(s) 149, 246
ApeKI GCWGC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 151
BanI GGYRCC 2 cut(s) 43, 155
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 278
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 302
BisI GCNGC 2 cut(s) 126, 267
BlsI GCNGC 2 cut(s) 127, 268
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 4 cut(s) 37, 45, 157, 253
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 66, 87
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 428, 460
BpuEI CTTGAG 1 cut(s) 227
BsaAI YACGTR 2 cut(s) 178, 262
BsaJI CCNNGG 2 cut(s) 39, 57
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 2 cut(s) 164, 248
Bse1I ACTGG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 254
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 39, 57
BseGI GGATG 2 cut(s) 53, 439
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 2 cut(s) 310, 374
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 2 cut(s) 151, 248
BshNI GGYRCC 2 cut(s) 43, 155
BsiSI CCGG 5 cut(s) 85, 165, 249, 255, 270
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 2 cut(s) 151, 248
Bsp1286I GDGCHC 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 254
Bsp143I GATC 3 cut(s) 13, 132, 448
Bsp19I CCATGG 2 cut(s) 39, 57
BspACI CCGC 2 cut(s) 50, 126
BspANI GGCC 2 cut(s) 151, 248
BspCNI CTCAG 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 254
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 37, 45, 157, 253
BspPI GGATC 2 cut(s) 21, 127
BspT107I GGYRCC 2 cut(s) 43, 155
BsrFI RCCGGY 2 cut(s) 164, 248
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 2 cut(s) 164, 248
BssECI CCNNGG 2 cut(s) 39, 57
BssMI GATC 3 cut(s) 13, 132, 448
BssT1I CCWWGG 2 cut(s) 39, 57
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 194
BstBAI YACGTR 2 cut(s) 178, 262
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 2 cut(s) 39, 57
BstF5I GGATG 2 cut(s) 53, 439
BstKTI GATC 3 cut(s) 16, 135, 451
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 3 cut(s) 13, 132, 448
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 2 cut(s) 151, 248
BtgI CCRYGG 2 cut(s) 39, 57
BtsCI GGATG 2 cut(s) 53, 439
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 286
CciI TCATGA 1 cut(s) 25
Cfr10I RCCGGY 2 cut(s) 164, 248
CviAII CATG 8 cut(s) 17, 26, 31, 40, 58, 103, 169, 337
CviJI RGCY 9 cut(s) 125, 151, 223, 248, 252, 269, 310, 332, 374
CviKI_1 RGCY 9 cut(s) 125, 151, 223, 248, 252, 269, 310, 332, 374
DdeI CTNAG 1 cut(s) 299
DpnI GATC 3 cut(s) 15, 134, 450
DpnII GATC 3 cut(s) 13, 132, 448
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 39, 57
Eco72I CACGTG 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 39, 57
ErhI CCWWGG 2 cut(s) 39, 57
FaeI CATG 8 cut(s) 20, 29, 34, 43, 61, 106, 172, 340
FatI CATG 8 cut(s) 16, 25, 30, 39, 57, 102, 168, 336
Fnu4HI GCNGC 2 cut(s) 126, 267
FokI GGATG 2 cut(s) 40, 446
Fsp4HI GCNGC 2 cut(s) 126, 267
GluI GCNGC 2 cut(s) 126, 267
GsaI CCCAGC 2 cut(s) 314, 378
HaeIII GGCC 2 cut(s) 151, 248
HapII CCGG 5 cut(s) 85, 165, 249, 255, 270
Hin1II CATG 8 cut(s) 20, 29, 34, 43, 61, 106, 172, 340
HinfI GANTC 1 cut(s) 237
HpaII CCGG 5 cut(s) 85, 165, 249, 255, 270
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 26, 255
Hpy99I CGWCG 2 cut(s) 73, 218
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 2 cut(s) 177, 261
HpyCH4V TGCA 3 cut(s) 100, 280, 292
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 2 cut(s) 177, 261
Hsp92II CATG 8 cut(s) 20, 29, 34, 43, 61, 106, 172, 340
Kpn2I TCCGGA 1 cut(s) 254
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 3 cut(s) 13, 132, 448
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 66, 87
MaeII ACGT 2 cut(s) 177, 261
MalI GATC 3 cut(s) 15, 134, 450
MboI GATC 3 cut(s) 13, 132, 448
MboII GAAGA 6 cut(s) 103, 181, 187, 385, 443, 451
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 151
MnlI CCTC 7 cut(s) 90, 146, 212, 221, 251, 424, 465
Mox20I TGGCCA 1 cut(s) 151
MroI TCCGGA 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 248
MscI TGGCCA 1 cut(s) 151
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 2 cut(s) 71, 167
Msp20I TGGCCA 1 cut(s) 151
MspI CCGG 5 cut(s) 85, 165, 249, 255, 270
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
NaeI GCCGGC 1 cut(s) 250
NcoI CCATGG 2 cut(s) 39, 57
NdeII GATC 3 cut(s) 13, 132, 448
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 8 cut(s) 20, 29, 34, 43, 61, 106, 172, 340
NlaIV GGNNCC 4 cut(s) 37, 45, 157, 253
NmeAIII GCCGAG 1 cut(s) 154
NspI RCATGY 1 cut(s) 172
PagI TCATGA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 127, 268
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
Ppu21I YACGTR 2 cut(s) 178, 262
Psp6I CCWGG 1 cut(s) 151
PspCI CACGTG 1 cut(s) 262
PspFI CCCAGC 2 cut(s) 310, 374
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 4 cut(s) 37, 45, 157, 253
PstNI CAGNNNCTG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 132
RseI CAYNNNNRTG 2 cut(s) 71, 167
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 126, 267
Sau3AI GATC 3 cut(s) 13, 132, 448
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 122
SetI ASST 4 cut(s) 10, 110, 180, 264
SfaNI GCATC 2 cut(s) 66, 87
SmiMI CAYNNNNRTG 2 cut(s) 71, 167
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 2 cut(s) 50, 126
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 2 cut(s) 39, 57
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 2 cut(s) 180, 264
TaqI TCGA 2 cut(s) 216, 235
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 299
TseI GCWGC 1 cut(s) 266
TspRI CASTG 1 cut(s) 299
XceI RCATGY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.