MD11G1090600.v1.1

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011018
Physical Location & Seq
Forward (+)
7522109 .. 7522591
483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1090600.v1.1.491

Sequence Viewer

Length: 483 bp
ATGGATGGTATGGATCACGGCCATGGAATGGGTGGCATGGCATCACCGGCGCCACCATCGTCATCCATGACGAACGGCACGATGATGATGCACCATAAGATGATGATGCACATGACCTTCTTTTGGGGCACAAAGGCGGAAGTACTCTTCTCCAAATGGCCAGGCACAAACACCGGCATGTATTACGTATCCCTACTCTTTGTGTTTGCCCTAGCTGTCCTCGTCGAGTGGCTCTCCCACTGCCGTCTGATCAGGGCCGGCGGAAGCGACGTCGTTTGTGGACTGGCTCAGACTCTTTTGCATGCAGTTAGGGTTGGGTTGGCTTATTTGGTGATGTTGGCGGTCATGTCGTTTAATGCTGGGGTGTTTCTTGTGGCGGTGGCTGGGCATACTGTAGGGTTCTTGCTTTTTGGGAGTAAGGTTTTTAAGAAGAAATCGGATGTTGATGATAAGGTTTCTGATCTTCCTCCAATGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

161

Amino Acids

17.31

Weight (kDa)

8.5

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 38 - 82 2.6e-09 Ctr copper transporter family
Ctr PF04145 95 - 137 1.9e-10 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 49
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 4 cut(s) 137, 261, 341, 377
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 2 cut(s) 19, 158
AcyI GRCGYC 2 cut(s) 50, 270
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 28, 123
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
AlwI GGATC 1 cut(s) 21
AoxI GGCC 3 cut(s) 19, 158, 255
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 36, 343
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 160
BanI GGYRCC 1 cut(s) 49
BccI CCATC 1 cut(s) 64
BceAI ACGGC 3 cut(s) 34, 91, 228
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 199
BclI TGATCA 1 cut(s) 249
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 53
BfuI GTATCC 1 cut(s) 199
BmcAI AGTACT 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 50, 78, 96
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 2 cut(s) 50, 270
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 123
Bse118I RCCGGY 3 cut(s) 46, 173, 257
Bse1I ACTGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 10, 62, 445
BseLI CCNNNNNNNGG 2 cut(s) 28, 123
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 131
BseYI CCCAGC 2 cut(s) 359, 383
BshFI GGCC 3 cut(s) 21, 160, 257
BshNI GGYRCC 1 cut(s) 49
BsiSI CCGG 3 cut(s) 47, 174, 258
BslI CCNNNNNNNGG 2 cut(s) 28, 123
BsnI GGCC 3 cut(s) 21, 160, 257
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 13, 249, 460
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 4 cut(s) 137, 261, 341, 377
BspANI GGCC 3 cut(s) 21, 160, 257
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 3 cut(s) 46, 173, 257
BsrI ACTGG 1 cut(s) 288
BssAI RCCGGY 3 cut(s) 46, 173, 257
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 13, 249, 460
BssNI GRCGYC 2 cut(s) 50, 270
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 2 cut(s) 50, 270
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 259, 303
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 10, 62, 445
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 3 cut(s) 16, 252, 463
BstMBI GATC 3 cut(s) 13, 249, 460
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 2 cut(s) 181, 305
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 131
BstSNI TACGTA 1 cut(s) 187
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 21, 160, 257
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 3 cut(s) 10, 62, 445
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 259, 303
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 3 cut(s) 46, 173, 257
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 143
CviAII CATG 7 cut(s) 23, 37, 67, 112, 178, 302, 346
CviJI RGCY 8 cut(s) 21, 160, 215, 232, 257, 287, 323, 383
CviKI_1 RGCY 8 cut(s) 21, 160, 215, 232, 257, 287, 323, 383
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 288
DinI GGCGCC 1 cut(s) 51
DpnI GATC 3 cut(s) 15, 251, 462
DpnII GATC 3 cut(s) 13, 249, 460
EaeI YGGCCR 2 cut(s) 19, 158
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 2 cut(s) 152, 276
Eco105I TACGTA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 22
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 7 cut(s) 26, 40, 70, 115, 181, 305, 349
FatI CATG 7 cut(s) 22, 36, 66, 111, 177, 301, 345
FbaI TGATCA 1 cut(s) 249
FokI GGATG 3 cut(s) 17, 49, 452
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 51
GsaI CCCAGC 2 cut(s) 363, 387
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 3 cut(s) 21, 160, 257
HapII CCGG 3 cut(s) 47, 174, 258
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 2 cut(s) 50, 270
Hin1II CATG 7 cut(s) 26, 40, 70, 115, 181, 305, 349
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 1 cut(s) 292
HpaII CCGG 3 cut(s) 47, 174, 258
HphI GGTGA 2 cut(s) 36, 343
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 4 cut(s) 249, 291, 439, 460
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 3 cut(s) 227, 272, 275
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 186, 270
HpyCH4V TGCA 4 cut(s) 91, 109, 301, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 2 cut(s) 186, 270
Hsp92I GRCGYC 2 cut(s) 50, 270
Hsp92II CATG 7 cut(s) 26, 40, 70, 115, 181, 305, 349
HspAI GCGC 1 cut(s) 50
KasI GGCGCC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 3 cut(s) 13, 249, 460
LpnPI CCDG 9 cut(s) 60, 147, 174, 187, 238, 269, 271, 345, 369
LweI GCATC 3 cut(s) 50, 78, 96
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 186, 270
MalI GATC 3 cut(s) 15, 251, 462
MboI GATC 3 cut(s) 13, 249, 460
MboII GAAGA 3 cut(s) 139, 442, 455
MhlI GDGCHC 1 cut(s) 131
MlsI TGGCCA 1 cut(s) 160
MluNI TGGCCA 1 cut(s) 160
Mly113I GGCGCC 1 cut(s) 50
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 2 cut(s) 230, 477
Mox20I TGGCCA 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 160
MseI TTAA 2 cut(s) 354, 426
MslI CAYNNNNRTG 3 cut(s) 21, 83, 176
Msp20I TGGCCA 1 cut(s) 160
MspI CCGG 3 cut(s) 47, 174, 258
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 47
NaeI GCCGGC 1 cut(s) 259
NarI GGCGCC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 22
NdeII GATC 3 cut(s) 13, 249, 460
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 7 cut(s) 26, 40, 70, 115, 181, 305, 349
NlaIV GGNNCC 1 cut(s) 51
NspI RCATGY 2 cut(s) 181, 305
PaeI GCATGC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdiI GCCGGC 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 28
PleI GAGTC 1 cut(s) 286
PluTI GGCGCC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 2 cut(s) 359, 383
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 255
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 3 cut(s) 21, 83, 176
SaqAI TTAA 2 cut(s) 354, 426
Sau3AI GATC 3 cut(s) 13, 249, 460
Sau96I GGNCC 1 cut(s) 255
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 119, 189, 217, 273, 423, 456
SfaNI GCATC 3 cut(s) 50, 78, 96
SfcI CTRYAG 1 cut(s) 393
SfoI GGCGCC 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 46
SmiMI CAYNNNNRTG 3 cut(s) 21, 83, 176
SnaBI TACGTA 1 cut(s) 187
SphI GCATGC 1 cut(s) 305
SsiI CCGC 4 cut(s) 137, 261, 341, 377
SspDI GGCGCC 1 cut(s) 49
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 2 cut(s) 189, 273
TaqI TCGA 1 cut(s) 225
TatI WGTACW 1 cut(s) 142
Tru1I TTAA 2 cut(s) 354, 426
Tru9I TTAA 2 cut(s) 354, 426
TscAI CASTG 1 cut(s) 245
TspRI CASTG 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 28
XceI RCATGY 2 cut(s) 181, 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 271
ZrmI AGTACT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.