Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012027

Physical Location & Seq

Genomic Coordinates Forward (+)

11595076 .. 11596548

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTCACCACCAACACTCTCGCCGTCCTCCTCCTCCTCTTCCTCAGTCTCTGCTCCGGGCAGTCACCTCCGGCACCGGAACCCATCGCCGCCGATGGACCTTCATCTCCGGTTAACTGTCTAGTATCTATGCTAAACGTATCAGACTGCTTCTCGTACGTTCAAGTGGGAAGTAATGAGATCAAGCCTGAAGCTGCTTGTTGCCCGGAGCTTGCTGGGATGGTTCAAAGTTCGCCGGAGTGTGTCTGTAATCTTTACGGCGGCGGCGCATCGCCGCGGTTTGGAGTTAAGCTTGATAAACAGAGAGCTGAGCAACTTTCAACTATCTGTGGTGTGAAAGCTCCATCTCCTAGTTTGTGTTCAGTTTTAGGTTTTCCGACGATCTCGCCGGCCGGAAGTGAAGATTCATCTTCAGGTTCTGAAGGATCGGATAAAGATAAGAAAAATGGAGCTATGACTACTAAATATTGTGGAGTAGCTTTGAACTCATTAGCCTTACTATTATTGTTCACGTTTCTTTCTTTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0008289 GO:0010876 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

176

Amino Acids

18.09

Weight (kDa)

4.71

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	34 - 120	9.4e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	40 - 120	9.5e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27130 AT3G43720 AT3G43720
fragaria_vesca	FvH4_3g27100 FvH4_3g27100
malus_domestica	MD11G1179700.v1.1
prunus_persica	Prupe.6G152000_v2.0.a1
pyrus_communis	pycom03g11600 pycom11g15500
rosa_chinensis	RchiOBHm_Chr5g0049721
rosa_laevigata	RLG00000034634
rosa_multiflora	Rmu_sc0005835.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031610
rosa_rugosa	Rorug05G0250500
rosa_samantha	Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana	Rw5G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	1 cut(s)	277
AciI	CCGC	5 cut(s)	90, 261, 264, 275, 277
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	390
AcuI	CTGAAG	3 cut(s)	210, 396, 441
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	164, 227, 321, 484
AluBI	AGCT	7 cut(s)	194, 211, 292, 308, 341, 452, 479
AluI	AGCT	7 cut(s)	194, 211, 292, 308, 341, 452, 479
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	433
AlwNI	CAGNNNCTG	2 cut(s)	51, 419
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	2 cut(s)	58, 206
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	4 cut(s)	89, 92, 214, 352
BceAI	ACGGC	2 cut(s)	8, 274
BcnI	CCSGG	2 cut(s)	58, 206
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	122, 351
BisI	GCNGC	5 cut(s)	90, 195, 262, 265, 275
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	5 cut(s)	91, 196, 263, 266, 276
Bme1390I	CCNGG	2 cut(s)	58, 206
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	75, 81
BmrFI	CCNGG	2 cut(s)	58, 206
BmsI	GCATC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuMI	CCSGG	2 cut(s)	58, 206
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	2 cut(s)	76, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	58, 300
BseRI	GAGGAG	3 cut(s)	20, 23, 26
BseX3I	CGGCCG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	393
BsiSI	CCGG	8 cut(s)	57, 71, 77, 110, 206, 236, 389, 393
BsiWI	CGTACG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	180, 381, 425
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	5 cut(s)	90, 261, 264, 275, 277
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	57, 301
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	75, 81
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	3 cut(s)	180, 381, 425
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	213, 390
BstDEI	CTNAG	2 cut(s)	44, 309
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	183, 384, 428
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	180, 381, 425
BstMCI	CGRYCG	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	56, 204
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	275
BtgZI	GCGATG	2 cut(s)	70, 255
BtsCI	GGATG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	213, 390
CaiI	CAGNNNCTG	2 cut(s)	51, 419
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	98
Cfr42I	CCGCGG	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	157
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	44, 309
DpnI	GATC	3 cut(s)	182, 383, 427
DpnII	GATC	3 cut(s)	180, 381, 425
EaeI	YGGCCR	1 cut(s)	390
EagI	CGGCCG	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	98
Eco52I	CGGCCG	1 cut(s)	390
Eco57I	CTGAAG	3 cut(s)	210, 396, 441
FaiI	YATR	2 cut(s)	131, 455
Fnu4HI	GCNGC	5 cut(s)	90, 195, 262, 265, 275
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	5 cut(s)	90, 195, 262, 265, 275
FspBI	CTAG	2 cut(s)	122, 351
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	5 cut(s)	90, 195, 262, 265, 275
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	8 cut(s)	57, 71, 77, 110, 206, 236, 389, 393
HhaI	GCGC	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	8 cut(s)	57, 71, 77, 110, 206, 236, 389, 393
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	2 cut(s)	115, 510
Hpy188I	TCNGA	4 cut(s)	145, 378, 421, 430
Hpy8I	GTNNAC	2 cut(s)	115, 510
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	111, 416
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	3 cut(s)	138, 159, 512
HpyF3I	CTNAG	2 cut(s)	44, 309
HpySE526I	ACGT	3 cut(s)	138, 159, 512
HspAI	GCGC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
KspAI	GTTAAC	1 cut(s)	115
KspI	CCGCGG	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	180, 381, 425
LmnI	GCTCC	4 cut(s)	59, 208, 346, 449
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	2 cut(s)	122, 351
MaeII	ACGT	3 cut(s)	138, 159, 512
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	3 cut(s)	182, 383, 427
MboI	GATC	3 cut(s)	180, 381, 425
MboII	GAAGA	3 cut(s)	31, 402, 413
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	38, 41, 44, 47, 53, 78
MroNI	GCCGGC	1 cut(s)	388
MseI	TTAA	4 cut(s)	114, 288, 524, 529
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	8 cut(s)	57, 71, 77, 110, 206, 236, 389, 393
MspR9I	CCNGG	2 cut(s)	58, 206
MvnI	CGCG	1 cut(s)	277
NaeI	GCCGGC	1 cut(s)	390
NciI	CCSGG	2 cut(s)	58, 206
NdeII	GATC	3 cut(s)	180, 381, 425
NgoMIV	GCCGGC	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	75, 81
NmuCI	GTSAC	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	404
Pfl23II	CGTACG	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	91, 196, 263, 266, 276
PspFI	CCCAGC	1 cut(s)	215
PspLI	CGTACG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	75, 81
PspPI	GGNCC	1 cut(s)	98
PstNI	CAGNNNCTG	2 cut(s)	51, 419
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	114, 288, 524, 529
SatI	GCNGC	5 cut(s)	90, 195, 262, 265, 275
Sau3AI	GATC	3 cut(s)	180, 381, 425
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	58, 206
SfaNI	GCATC	1 cut(s)	278
Sfr303I	CCGCGG	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	98
SsiI	CCGC	5 cut(s)	90, 261, 264, 275, 277
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	2 cut(s)	122, 351
StyD4I	CCNGG	2 cut(s)	56, 204
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	3 cut(s)	141, 162, 515
TauI	GCSGC	4 cut(s)	92, 264, 267, 277
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	4 cut(s)	114, 288, 524, 529
Tru9I	TTAA	4 cut(s)	114, 288, 524, 529
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	93, 396
VpaK11BI	GGWCC	1 cut(s)	98
XspI	CTAG	2 cut(s)	122, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.