Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012027

Physical Location & Seq

Genomic Coordinates Forward (+)

49393987 .. 49396622

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G030870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCATTCAGTACCAATCTCCTTGCCGCCGTCTTCACCGCCATGTTATTCATGCTGACATTCCACAGCTGCGGCGTGTCGGCACAGGCGCCCGGGCCAGCTCCGGAGGCGTCGATTGATTGCTCCGCGCAGCTGCTGACGTTGTCGGACTGCCTGACGTACGTGGAGGAAGGTAGTAACTTGACGAAGCCGGACAAGGCTTGCTGCCCTGAGCTGGCGGCGCTGGTGAAAAGCACCCCCCAATGCTTGTGCTACTTGCTTCAGAAGAACAGTACCAGCAGCTACGGCATTGAAATCGACATGAACAAAGCTCTTGATCTCCCTTCTGTTTGCAAAGTTGAGACCCCTCCTACCAGCGCCTGTGCACTTCTTGGAATACCAGTGCCTTCTGAAGGGCCTACTGCTAACTCACCTGCTGGTTCGGAGCTAGCACCCCAAGGACCTTCTGCTTCCCCGGGAAACCAAACAGACCATGGAGCTTCAACTACTGCTAAATCCCTTATGGCACTCTTTATTGGCTTAGCTATAGCATCTCTTCCTACATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0008289 GO:0010876 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

183

Amino Acids

18.78

Weight (kDa)

4.55

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	27 - 121	4e-18	Probable lipid transfer
Tryp_alpha_amyl	PF00234	41 - 121	5e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27130 AT3G43720 AT3G43720
fragaria_vesca	FvH4_3g27100 FvH4_3g27100
malus_domestica	MD11G1179700.v1.1
prunus_persica	Prupe.6G152000_v2.0.a1
pyrus_communis	pycom03g11600 pycom11g15500
rosa_chinensis	RchiOBHm_Chr5g0049721
rosa_laevigata	RLG00000034634
rosa_multiflora	Rmu_sc0005835.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031610
rosa_rugosa	Rorug05G0250500
rosa_samantha	Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana	Rw5G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	88
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	5 cut(s)	27, 39, 72, 126, 218
AcuI	CTGAAG	2 cut(s)	245, 411
AcyI	GRCGYC	2 cut(s)	89, 110
AfaI	GTAC	3 cut(s)	13, 161, 274
AfiI	CCNNNNNNNGG	2 cut(s)	214, 392
AgsI	TTSAA	2 cut(s)	293, 483
AluBI	AGCT	9 cut(s)	69, 101, 133, 214, 282, 311, 427, 479, 524
AluI	AGCT	9 cut(s)	69, 101, 133, 214, 282, 311, 427, 479, 524
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	335
Alw44I	GTGCAC	1 cut(s)	363
AlwNI	CAGNNNCTG	2 cut(s)	136, 360
Ama87I	CYCGRG	2 cut(s)	92, 454
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	2 cut(s)	95, 395
ApaLI	GTGCAC	1 cut(s)	363
ApeKI	GCWGC	5 cut(s)	69, 130, 133, 204, 279
AspLEI	GCGC	4 cut(s)	91, 130, 223, 359
AspS9I	GGNCC	3 cut(s)	95, 395, 440
AsuC2I	CCSGG	4 cut(s)	93, 94, 455, 456
AsuHPI	GGTGA	3 cut(s)	28, 238, 402
AsuNHI	GCTAGC	1 cut(s)	427
AvaI	CYCGRG	2 cut(s)	92, 454
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	5 cut(s)	56, 120, 142, 191, 291
BceAI	ACGGC	2 cut(s)	14, 301
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BcnI	CCSGG	4 cut(s)	93, 94, 455, 456
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	525
BfoI	RGCGCY	3 cut(s)	92, 224, 360
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
BlpI	GCTNAGC	1 cut(s)	520
BlsI	GCNGC	8 cut(s)	28, 71, 74, 132, 135, 206, 220, 281
Bme1390I	CCNGG	4 cut(s)	93, 94, 455, 456
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	2 cut(s)	92, 454
BmgT120I	GGNCC	3 cut(s)	95, 395, 440
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	4 cut(s)	93, 94, 455, 456
BmsI	GCATC	1 cut(s)	539
BmtI	GCTAGC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	520
BpuMI	CCSGG	4 cut(s)	93, 94, 455, 456
BsaAI	YACGTR	1 cut(s)	163
BsaHI	GRCGYC	2 cut(s)	89, 110
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	5 cut(s)	92, 436, 453, 454, 472
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 392
Bse1I	ACTGG	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	5 cut(s)	92, 436, 453, 454, 472
BseLI	CCNNNNNNNGG	2 cut(s)	214, 392
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	5 cut(s)	56, 120, 142, 191, 291
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	97, 397
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	2 cut(s)	92, 454
BsiSI	CCGG	4 cut(s)	93, 104, 191, 455
BsiWI	CGTACG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	214, 392
BsmAI	GTCTC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	97, 397
Bso31I	GGTCTC	1 cut(s)	335
BsoBI	CYCGRG	2 cut(s)	92, 454
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	520
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	5 cut(s)	27, 39, 72, 126, 218
BspANI	GGCC	2 cut(s)	97, 397
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	5 cut(s)	92, 436, 453, 454, 472
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	89, 110
BssT1I	CCWWGG	2 cut(s)	436, 472
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	2 cut(s)	89, 110
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	4 cut(s)	99, 202, 216, 429
BstDEI	CTNAG	2 cut(s)	210, 520
BstDSI	CCRYGG	1 cut(s)	472
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	3 cut(s)	92, 224, 360
BstHHI	GCGC	4 cut(s)	91, 130, 223, 359
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 220, 285
BstSCI	CCNGG	4 cut(s)	91, 92, 453, 454
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	5 cut(s)	56, 120, 142, 191, 291
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	97, 397
BtgI	CCRYGG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	4 cut(s)	99, 202, 216, 429
CaiI	CAGNNNCTG	2 cut(s)	136, 360
CfoI	GCGC	4 cut(s)	91, 130, 223, 359
Cfr13I	GGNCC	3 cut(s)	95, 395, 440
Cfr9I	CCCGGG	2 cut(s)	92, 454
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	12, 160, 273
CviAII	CATG	4 cut(s)	43, 52, 301, 473
CviQI	GTAC	3 cut(s)	12, 160, 273
DdeI	CTNAG	2 cut(s)	210, 520
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	2 cut(s)	436, 472
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	245, 411
Eco88I	CYCGRG	2 cut(s)	92, 454
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	2 cut(s)	395, 440
EcoT14I	CCWWGG	2 cut(s)	436, 472
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	2 cut(s)	436, 472
FaeI	CATG	4 cut(s)	46, 55, 304, 476
FaiI	YATR	6 cut(s)	44, 53, 302, 474, 503, 527
FatI	CATG	4 cut(s)	42, 51, 300, 472
Fnu4HI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
Fsp4HI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	4 cut(s)	90, 129, 222, 358
GluI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
HaeII	RGCGCY	3 cut(s)	92, 224, 360
HaeIII	GGCC	2 cut(s)	97, 397
HapII	CCGG	4 cut(s)	93, 104, 191, 455
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	4 cut(s)	91, 130, 223, 359
Hin1I	GRCGYC	2 cut(s)	89, 110
Hin1II	CATG	4 cut(s)	46, 55, 304, 476
Hin6I	GCGC	4 cut(s)	89, 128, 221, 357
HinP1I	GCGC	4 cut(s)	89, 128, 221, 357
HpaII	CCGG	4 cut(s)	93, 104, 191, 455
HphI	GGTGA	3 cut(s)	28, 238, 402
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	5 cut(s)	148, 264, 391, 424, 551
Hpy188III	TCNNGA	2 cut(s)	104, 314
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	5 cut(s)	164, 333, 386, 396, 453
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	3 cut(s)	140, 158, 162
HpyCH4V	TGCA	2 cut(s)	333, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 220, 285
HpyF3I	CTNAG	2 cut(s)	210, 520
HpySE526I	ACGT	3 cut(s)	140, 158, 162
Hsp92I	GRCGYC	2 cut(s)	89, 110
Hsp92II	CATG	4 cut(s)	46, 55, 304, 476
HspAI	GCGC	4 cut(s)	89, 128, 221, 357
KasI	GGCGCC	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	4 cut(s)	106, 128, 424, 476
Lsp1109I	GCAGC	5 cut(s)	56, 120, 142, 191, 291
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	3 cut(s)	140, 158, 162
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	25, 277, 527
MhlI	GDGCHC	1 cut(s)	367
Mly113I	GGCGCC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	100, 160, 357
MroI	TCCGGA	1 cut(s)	103
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	69, 133
MspI	CCGG	4 cut(s)	93, 104, 191, 455
MspR9I	CCNGG	4 cut(s)	93, 94, 455, 456
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	107, 220, 285
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	4 cut(s)	93, 94, 455, 456
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	46, 55, 304, 476
NlaIV	GGNNCC	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	421
PctI	GAATGC	1 cut(s)	5
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	8 cut(s)	28, 71, 74, 132, 135, 206, 220, 281
PluTI	GGCGCC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	3 cut(s)	95, 395, 440
PspPPI	RGGWCCY	1 cut(s)	440
PstNI	CAGNNNCTG	2 cut(s)	136, 360
PsyI	GACNNNGTC	1 cut(s)	142
PvuII	CAGCTG	2 cut(s)	69, 133
RsaI	GTAC	3 cut(s)	13, 161, 274
RsaNI	GTAC	3 cut(s)	12, 160, 273
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	3 cut(s)	95, 395, 440
ScrFI	CCNGG	4 cut(s)	93, 94, 455, 456
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	525
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	440
SmaI	CCCGGG	2 cut(s)	94, 456
SmiMI	CAYNNNNRTG	1 cut(s)	41
SrfI	GCCCGGGC	1 cut(s)	94
SsiI	CCGC	5 cut(s)	27, 39, 72, 126, 218
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	4 cut(s)	91, 92, 453, 454
StyI	CCWWGG	2 cut(s)	436, 472
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	3 cut(s)	143, 161, 165
TaqI	TCGA	2 cut(s)	113, 297
TauI	GCSGC	3 cut(s)	29, 75, 221
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	5 cut(s)	69, 130, 133, 204, 279
TspDTI	ATGAA	2 cut(s)	40, 317
TspMI	CCCGGG	2 cut(s)	92, 454
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	440
XagI	CCTNNNNNAGG	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmaI	CCCGGG	2 cut(s)	92, 454
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.