Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012027

Physical Location & Seq

Genomic Coordinates Forward (+)

16226654 .. 16229470

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGCAAAGCCATTGTTGCTACCGGTTCCATCATGTTGTTGATGACAATACTTGTTCATGGCGTTTCAGCGCAGCTGGCACCGGCATCGGCCCCAGCCCCGGCAACGACTGATTGCGACACAACCCTGCTGGGGCTGTCAGATTGCCTGACGTACGTGGCGGAAGGCAGCAATTTGACCAAGCCAGATAAGCCGTGCTGTCCGGAGCTGGCGGGGCTCGTGAAGGACAACCCCGTCTGCTTGTGCTACTTGCTCGGCAACACCAGTAGCAGCTTAAGCTTTCAGATTGACATGAACAGGGCTCTCAAGCTTCCTACTGTTTGCAAAGTTGATACTCCCCCCGCTAGCACTTGCGCAGTTCTGGGAATCCCAGTGTCTGCTCCCATAGCTTCTGAAGGGCCGAACTCTCCTGATATTGCGGAATCACCTGAAGGACCTGCTCCAGCTGCCGGTTCACAAGAAGCCAATAAAGATAAAAGTGGAGCTTCGAGGACTGCTGACTCTGTTATGGCTCTCCTTGGTGGCTTAGCTATTGCATTTCTTCCCGCATTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0008289 GO:0010876 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

186

Amino Acids

18.65

Weight (kDa)

4.56

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27130 AT3G43720 AT3G43720
fragaria_vesca	FvH4_3g27100 FvH4_3g27100
malus_domestica	MD11G1179700.v1.1
prunus_persica	Prupe.6G152000_v2.0.a1
pyrus_communis	pycom03g11600 pycom11g15500
rosa_chinensis	RchiOBHm_Chr5g0049721
rosa_laevigata	RLG00000034634
rosa_multiflora	Rmu_sc0005835.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031610
rosa_rugosa	Rorug05G0250500
rosa_samantha	Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana	Rw5G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
Acc16I	TGCGCA	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	5 cut(s)	161, 212, 342, 419, 546
AcuI	CTGAAG	2 cut(s)	414, 450
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	100, 132, 449
AflII	CTTAAG	1 cut(s)	274
AgeI	ACCGGT	1 cut(s)	23
AluBI	AGCT	9 cut(s)	76, 208, 273, 279, 310, 389, 446, 485, 530
AluI	AGCT	9 cut(s)	76, 208, 273, 279, 310, 389, 446, 485, 530
AlwNI	CAGNNNCTG	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	2 cut(s)	90, 398
ApeKI	GCWGC	4 cut(s)	73, 168, 270, 446
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	73, 356
AspS9I	GGNCC	3 cut(s)	91, 398, 434
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	417
AsuNHI	GCTAGC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	219, 304
BauI	CACGAG	1 cut(s)	218
BbvI	GCAGC	4 cut(s)	85, 180, 282, 433
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcnI	CCSGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	4 cut(s)	74, 169, 271, 447
BlpI	GCTNAGC	1 cut(s)	526
BlsI	GCNGC	4 cut(s)	75, 170, 272, 448
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	3 cut(s)	91, 398, 434
BmiI	GGNNCC	3 cut(s)	28, 81, 93
BmrFI	CCNGG	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	95
BmtI	GCTAGC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	99, 517
BsaWI	WCCGGW	2 cut(s)	23, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 132, 449
Bse118I	RCCGGY	3 cut(s)	23, 82, 449
Bse1I	ACTGG	2 cut(s)	264, 371
BseAI	TCCGGA	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	99, 517
BseLI	CCNNNNNNNGG	3 cut(s)	100, 132, 449
BseNI	ACTGG	2 cut(s)	264, 371
BseXI	GCAGC	4 cut(s)	85, 180, 282, 433
BseYI	CCCAGC	2 cut(s)	94, 130
BshFI	GGCC	2 cut(s)	92, 400
BshNI	GGYRCC	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	24, 83, 101, 203, 450
BsiWI	CGTACG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	100, 132, 449
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	92, 400
Bsp1286I	GDGCHC	2 cut(s)	219, 304
Bsp13I	TCCGGA	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	526
BspACI	CCGC	5 cut(s)	161, 212, 342, 419, 546
BspANI	GGCC	2 cut(s)	92, 400
BspEI	TCCGGA	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	28, 81, 93
BspMI	ACCTGC	1 cut(s)	445
BspOI	GCTAGC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	274
BsrFI	RCCGGY	3 cut(s)	23, 82, 449
BsrI	ACTGG	2 cut(s)	264, 371
BssAI	RCCGGY	3 cut(s)	23, 82, 449
BssECI	CCNNGG	2 cut(s)	99, 517
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	319
BstAFI	CTTAAG	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	78, 210, 346
BstDEI	CTNAG	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	73, 356
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 77, 190, 214, 276, 386, 446
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	85, 180, 282, 433
BsuRI	GGCC	2 cut(s)	92, 400
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	78, 210, 346
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	2 cut(s)	73, 356
Cfr10I	RCCGGY	3 cut(s)	23, 82, 449
Cfr13I	GGNCC	3 cut(s)	91, 398, 434
Csp6I	GTAC	1 cut(s)	154
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	3 cut(s)	34, 59, 292
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	526
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	517
Eco24I	GRGCYC	2 cut(s)	219, 304
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	2 cut(s)	414, 450
EcoO109I	RGGNCCY	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	219, 304
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	3 cut(s)	37, 62, 295
FaiI	YATR	5 cut(s)	35, 60, 293, 386, 509
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FatI	CATG	3 cut(s)	33, 58, 291
FauI	CCCGC	3 cut(s)	205, 349, 553
Fnu4HI	GCNGC	4 cut(s)	74, 169, 271, 447
FriOI	GRGCYC	2 cut(s)	219, 304
Fsp4HI	GCNGC	4 cut(s)	74, 169, 271, 447
FspBI	CTAG	1 cut(s)	345
FspI	TGCGCA	1 cut(s)	355
GlaI	GCGC	2 cut(s)	72, 355
GluI	GCNGC	4 cut(s)	74, 169, 271, 447
GsaI	CCCAGC	2 cut(s)	98, 134
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	92, 400
HapII	CCGG	5 cut(s)	24, 83, 101, 203, 450
HhaI	GCGC	2 cut(s)	73, 356
Hin1II	CATG	3 cut(s)	37, 62, 295
Hin6I	GCGC	2 cut(s)	71, 354
HinP1I	GCGC	2 cut(s)	71, 354
HindIII	AAGCTT	2 cut(s)	277, 308
HinfI	GANTC	3 cut(s)	366, 422, 500
HpaII	CCGG	5 cut(s)	24, 83, 101, 203, 450
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	4 cut(s)	142, 285, 394, 557
Hpy188III	TCNNGA	3 cut(s)	203, 220, 410
Hpy8I	GTNNAC	1 cut(s)	455
HpyAV	CCTTC	4 cut(s)	158, 217, 389, 425
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	152, 156
HpyCH4V	TGCA	2 cut(s)	324, 536
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 77, 190, 214, 276, 386, 446
HpyF3I	CTNAG	1 cut(s)	526
HpySE526I	ACGT	2 cut(s)	152, 156
Hsp92II	CATG	3 cut(s)	37, 62, 295
HspAI	GCGC	2 cut(s)	71, 354
Kpn2I	TCCGGA	1 cut(s)	202
LmnI	GCTCC	4 cut(s)	205, 385, 445, 482
Lsp1109I	GCAGC	4 cut(s)	85, 180, 282, 433
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	152, 156
MboII	GAAGA	2 cut(s)	533, 544
MhlI	GDGCHC	2 cut(s)	219, 304
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	1 cut(s)	483
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	76, 446
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	5 cut(s)	24, 83, 101, 203, 450
MspR9I	CCNGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	548
MwoI	GCNNNNNNNGC	7 cut(s)	17, 77, 190, 214, 276, 386, 446
NciI	CCSGG	1 cut(s)	101
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	3 cut(s)	37, 62, 295
NlaIV	GGNNCC	3 cut(s)	28, 81, 93
NmeAIII	GCCGAG	1 cut(s)	234
NsbI	TGCGCA	1 cut(s)	355
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	366, 422
Pfl23II	CGTACG	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	75, 170, 272, 448
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	434
PspFI	CCCAGC	2 cut(s)	94, 130
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	28, 81, 93
PspPI	GGNCC	3 cut(s)	91, 398, 434
PspPPI	RGGWCCY	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	377
PvuII	CAGCTG	2 cut(s)	76, 446
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	4 cut(s)	74, 169, 271, 447
Sau96I	GGNCC	3 cut(s)	91, 398, 434
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	219, 304
SfaNI	GCATC	1 cut(s)	95
SinI	GGWCC	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	274, 305
SmoI	CTYRAG	2 cut(s)	274, 305
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	5 cut(s)	161, 212, 342, 419, 546
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	2 cut(s)	155, 159
TaqI	TCGA	1 cut(s)	488
TasI	AATT	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	366, 422
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	4 cut(s)	73, 168, 270, 446
TspDTI	ATGAA	2 cut(s)	47, 308
TspRI	CASTG	1 cut(s)	378
Vha464I	CTTAAG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	434
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.