RLG00000034634

Non-specific lipid transfer protein GPI-anchored

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012027
Physical Location & Seq
Forward (+)
46840876 .. 46843261
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034634

Sequence Viewer

Length: 561 bp
ATGGCATTCAGTACCAATCTCCTTGCCGCCGTCTTCACCGCCATGTTATTCATGCTGACATTCCACAGCTGCGGCGTGTCGGCACAGGCGCCGGGGCCAGCTCCGGAGGCGTCGACGGATTGCCCCACGCAGCTGCTGTCGTTGTCGGACTGCCTGACGTACGTGGAGGAAGGTAGCAACTTGACGAAGCCGGACAAGGCTTGCTGCCCCGAGCTGGCGGCGCTGGTGAAAAGCACCCCCCAATGCTTGTGCTACTTGCTTCAGAAGAACAGTACCAGCAGCTACGGCATTGAAATCGACATGAACAAAGCTCTTCATCTCCCTTCTGTTTGCAAAGTTGAGACCCCTCCTACCAGCGCCTGTGCACTTCTTGGAATACCAGTGGAAGCTCCCATGGCTTCTGAAGGGCCTACTGCTAACTCACCTGCTGGTTCGGAGCTAGCACCTCAAGGACCTTCTGCTTCCCAAGGAAACCAAGCAGACCATGGAGCTTCAACTACTGCTAAATCCCTTATGGCACTCTTTATTGGCTTAGCTATATCTCTTCCTACATTTTTCTGA

Protein Analysis

187

Amino Acids

19.14

Weight (kDa)

4.71

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 27 - 121 2.4e-18 Probable lipid transfer
Tryp_alpha_amyl PF00234 41 - 121 9.9e-13 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27130 AT3G43720 AT3G43720
fragaria_vesca FvH4_3g27100 FvH4_3g27100
malus_domestica MD11G1179700.v1.1
prunus_persica Prupe.6G152000_v2.0.a1
pyrus_communis pycom03g11600 pycom11g15500
rosa_chinensis RchiOBHm_Chr5g0049721
rosa_laevigata RLG00000034634
rosa_multiflora Rmu_sc0005835.1_g000001
rosa_roxburghii Rroxscaffold_1G00031610
rosa_rugosa Rorug05G0250500
rosa_samantha Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana Rw5G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 433
Acc36I ACCTGC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 4 cut(s) 27, 39, 72, 218
AcuI CTGAAG 2 cut(s) 245, 423
AcyI GRCGYC 2 cut(s) 89, 110
AfaI GTAC 3 cut(s) 13, 161, 274
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 293, 495
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 335
Alw44I GTGCAC 1 cut(s) 363
AlwNI CAGNNNCTG 2 cut(s) 136, 360
Ama87I CYCGRG 1 cut(s) 209
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 2 cut(s) 95, 407
ApaLI GTGCAC 1 cut(s) 363
ApeKI GCWGC 5 cut(s) 69, 130, 133, 204, 279
AspLEI GCGC 3 cut(s) 91, 223, 359
AspS9I GGNCC 3 cut(s) 95, 407, 452
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 3 cut(s) 28, 238, 414
AsuNHI GCTAGC 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 5 cut(s) 56, 120, 142, 191, 291
BceAI ACGGC 2 cut(s) 14, 301
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 440
BfoI RGCGCY 3 cut(s) 92, 224, 360
BfuAI ACCTGC 1 cut(s) 433
BisI GCNGC 8 cut(s) 27, 70, 73, 131, 134, 205, 219, 280
BlpI GCTNAGC 1 cut(s) 532
BlsI GCNGC 8 cut(s) 28, 71, 74, 132, 135, 206, 220, 281
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 95, 407, 452
BmiI GGNNCC 2 cut(s) 90, 96
BmrFI CCNGG 1 cut(s) 93
BmtI GCTAGC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 2 cut(s) 89, 110
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 4 cut(s) 92, 393, 466, 484
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 380
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 4 cut(s) 92, 393, 466, 484
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 5 cut(s) 56, 120, 142, 191, 291
BshFI GGCC 2 cut(s) 97, 409
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 92, 104, 191
BsiWI CGTACG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 2 cut(s) 97, 409
Bso31I GGTCTC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 367
Bsp13I TCCGGA 1 cut(s) 103
Bsp1720I GCTNAGC 1 cut(s) 532
Bsp19I CCATGG 2 cut(s) 393, 484
BspACI CCGC 4 cut(s) 27, 39, 72, 218
BspANI GGCC 2 cut(s) 97, 409
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 90, 96
BspMI ACCTGC 1 cut(s) 433
BspOI GCTAGC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 4 cut(s) 92, 393, 466, 484
BssNI GRCGYC 2 cut(s) 89, 110
BssT1I CCWWGG 3 cut(s) 393, 466, 484
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 2 cut(s) 318, 549
BstACI GRCGYC 2 cut(s) 89, 110
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 99, 202, 216, 441
BstDEI CTNAG 1 cut(s) 532
BstDSI CCRYGG 2 cut(s) 393, 484
BstH2I RGCGCY 3 cut(s) 92, 224, 360
BstHHI GCGC 3 cut(s) 91, 223, 359
BstMAI GTCTC 1 cut(s) 335
BstMWI GCNNNNNNNGC 4 cut(s) 107, 220, 285, 395
BstSCI CCNGG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 367
BstV1I GCAGC 5 cut(s) 56, 120, 142, 191, 291
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 97, 409
BtgI CCRYGG 2 cut(s) 393, 484
BtsIMutI CAGTG 1 cut(s) 387
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 4 cut(s) 99, 202, 216, 441
CaiI CAGNNNCTG 2 cut(s) 136, 360
CfoI GCGC 3 cut(s) 91, 223, 359
Cfr13I GGNCC 3 cut(s) 95, 407, 452
CseI GACGC 1 cut(s) 99
Csp6I GTAC 3 cut(s) 12, 160, 273
CviAII CATG 5 cut(s) 43, 52, 301, 394, 485
CviQI GTAC 3 cut(s) 12, 160, 273
DdeI CTNAG 1 cut(s) 532
DinI GGCGCC 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 318, 549
EarI CTCTTC 2 cut(s) 318, 549
Eco130I CCWWGG 3 cut(s) 393, 466, 484
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 245, 423
Eco88I CYCGRG 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 407, 452
EcoT14I CCWWGG 3 cut(s) 393, 466, 484
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 393, 466, 484
FaeI CATG 5 cut(s) 46, 55, 304, 397, 488
FaiI YATR 7 cut(s) 44, 53, 302, 395, 486, 515, 539
FatI CATG 5 cut(s) 42, 51, 300, 393, 484
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 8 cut(s) 27, 70, 73, 131, 134, 205, 219, 280
Fsp4HI GCNGC 8 cut(s) 27, 70, 73, 131, 134, 205, 219, 280
FspBI CTAG 1 cut(s) 440
GlaI GCGC 3 cut(s) 90, 222, 358
GluI GCNGC 8 cut(s) 27, 70, 73, 131, 134, 205, 219, 280
HaeII RGCGCY 3 cut(s) 92, 224, 360
HaeIII GGCC 2 cut(s) 97, 409
HapII CCGG 3 cut(s) 92, 104, 191
HgaI GACGC 1 cut(s) 99
HhaI GCGC 3 cut(s) 91, 223, 359
Hin1I GRCGYC 2 cut(s) 89, 110
Hin1II CATG 5 cut(s) 46, 55, 304, 397, 488
Hin6I GCGC 3 cut(s) 89, 221, 357
HinP1I GCGC 3 cut(s) 89, 221, 357
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HpaII CCGG 3 cut(s) 92, 104, 191
HphI GGTGA 3 cut(s) 28, 238, 414
Hpy166II GTNNAC 2 cut(s) 114, 365
Hpy188I TCNGA 5 cut(s) 148, 264, 403, 436, 560
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 2 cut(s) 114, 365
Hpy99I CGWCG 2 cut(s) 115, 118
HpyAV CCTTC 4 cut(s) 164, 333, 398, 465
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 2 cut(s) 158, 162
HpyCH4V TGCA 2 cut(s) 333, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 220, 285, 395
HpyF3I CTNAG 1 cut(s) 532
HpySE526I ACGT 2 cut(s) 158, 162
Hsp92I GRCGYC 2 cut(s) 89, 110
Hsp92II CATG 5 cut(s) 46, 55, 304, 397, 488
HspAI GCGC 3 cut(s) 89, 221, 357
KasI GGCGCC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 4 cut(s) 106, 394, 436, 488
Lsp1109I GCAGC 5 cut(s) 56, 120, 142, 191, 291
MaeI CTAG 1 cut(s) 440
MaeII ACGT 2 cut(s) 158, 162
MboII GAAGA 4 cut(s) 25, 277, 305, 536
MhlI GDGCHC 1 cut(s) 367
Mly113I GGCGCC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 4 cut(s) 100, 160, 357, 456
MroI TCCGGA 1 cut(s) 103
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 69, 133
MspI CCGG 3 cut(s) 92, 104, 191
MspR9I CCNGG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 4 cut(s) 107, 220, 285, 395
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 2 cut(s) 393, 484
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 5 cut(s) 46, 55, 304, 397, 488
NlaIV GGNNCC 2 cut(s) 90, 96
PaqCI CACCTGC 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 318
PctI GAATGC 1 cut(s) 5
Pfl23II CGTACG 1 cut(s) 159
PkrI GCNGC 8 cut(s) 28, 71, 74, 132, 135, 206, 220, 281
PluTI GGCGCC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 90, 96
PspPI GGNCC 3 cut(s) 95, 407, 452
PspPPI RGGWCCY 1 cut(s) 452
PstNI CAGNNNCTG 2 cut(s) 136, 360
PvuII CAGCTG 2 cut(s) 69, 133
RsaI GTAC 3 cut(s) 13, 161, 274
RsaNI GTAC 3 cut(s) 12, 160, 273
RseI CAYNNNNRTG 1 cut(s) 41
SalI GTCGAC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 318
SatI GCNGC 8 cut(s) 27, 70, 73, 131, 134, 205, 219, 280
Sau96I GGNCC 3 cut(s) 95, 407, 452
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 367
SfoI GGCGCC 1 cut(s) 90
SgrDI CGTCGACG 1 cut(s) 112
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
SsiI CCGC 4 cut(s) 27, 39, 72, 218
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 3 cut(s) 393, 466, 484
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 2 cut(s) 161, 165
TaqI TCGA 2 cut(s) 113, 297
TauI GCSGC 3 cut(s) 29, 75, 221
TscAI CASTG 1 cut(s) 387
TseI GCWGC 5 cut(s) 69, 130, 133, 204, 279
TspDTI ATGAA 3 cut(s) 40, 305, 317
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 387
VneI GTGCAC 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.