pycom03g11600

Non-specific lipid transfer protein GPI-anchored

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012027
Physical Location & Seq
Forward (+)
11545898 .. 11546321
424 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11600.1

Sequence Viewer

Length: 384 bp
ATGAGCAAAGCCATTGCTGCCAGTTCTATCATGTTGTTGATGACAATACTTGTTCATGCAACGACAGATTGCTACACAAGCCTGCTGGGGCTATCAGATTGCCTGACATACGTGGAGGAAGGCAGCAATTTGACCAAGCCAGGTAACCTGTGCTGGCCGGAGCTGGCGAGGCTCGTGAAAGGCAACTCGGTGTGCTTGTGCTACTTGCTCGCCAACAGCAGTAGCAACTTAGGCGTTCAGATTGACATCAACAGGGCTCTCAAGCTTGCTACTGTTGCAAAGTGGATACTTCCCCCCACCCCCCCCCCCCCCGGACAGGGCTCTCAAGCTTCCTACTGTTGCAAAGTGGATACTTCCCCCCCCCCCCCGGGGCGGCGCTACTAG

Protein Analysis

128

Amino Acids

13.55

Weight (kDa)

8.5

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 18 - 91 1e-10 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27130 AT3G43720 AT3G43720
fragaria_vesca FvH4_3g27100 FvH4_3g27100
malus_domestica MD11G1179700.v1.1
prunus_persica Prupe.6G152000_v2.0.a1
pyrus_communis pycom03g11600 pycom11g15500
rosa_chinensis RchiOBHm_Chr5g0049721
rosa_laevigata RLG00000034634
rosa_multiflora Rmu_sc0005835.1_g000001
rosa_roxburghii Rroxscaffold_1G00031610
rosa_rugosa Rorug05G0250500
rosa_samantha Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana Rw5G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 373
AcoI YGGCCR 1 cut(s) 155
AfiI CCNNNNNNNGG 7 cut(s) 311, 316, 317, 367, 368, 369, 372
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 3 cut(s) 163, 265, 329
AluI AGCT 3 cut(s) 163, 265, 329
Ama87I CYCGRG 1 cut(s) 367
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 17, 123
AspLEI GCGC 1 cut(s) 378
AsuC2I CCSGG 3 cut(s) 312, 368, 369
AvaI CYCGRG 1 cut(s) 367
BanII GRGCYC 2 cut(s) 259, 323
BauI CACGAG 1 cut(s) 173
BbvI GCAGC 2 cut(s) 4, 135
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 2 cut(s) 279, 343
BcnI CCSGG 3 cut(s) 312, 368, 369
BfaI CTAG 1 cut(s) 382
BfoI RGCGCY 1 cut(s) 379
BfuI GTATCC 2 cut(s) 279, 343
BisI GCNGC 3 cut(s) 18, 124, 374
BlsI GCNGC 3 cut(s) 19, 125, 375
Bme1390I CCNGG 4 cut(s) 141, 312, 368, 369
BmeT110I CYCGRG 1 cut(s) 367
BmrFI CCNGG 4 cut(s) 141, 312, 368, 369
BpuEI CTTGAG 2 cut(s) 245, 309
BpuMI CCSGG 3 cut(s) 312, 368, 369
BsaAI YACGTR 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 4 cut(s) 310, 366, 367, 368
Bsc4I CCNNNNNNNGG 7 cut(s) 311, 316, 317, 367, 368, 369, 372
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 4 cut(s) 310, 366, 367, 368
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 7 cut(s) 311, 316, 317, 367, 368, 369, 372
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 4, 135
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 3 cut(s) 158, 312, 368
BslI CCNNNNNNNGG 7 cut(s) 311, 316, 317, 367, 368, 369, 372
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 259, 323
BspACI CCGC 1 cut(s) 373
BspANI GGCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 4 cut(s) 310, 366, 367, 368
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 274, 338
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 5 cut(s) 83, 155, 165, 210, 267
BstDEI CTNAG 1 cut(s) 229
BstEII GGTNACC 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstMWI GCNNNNNNNGC 5 cut(s) 17, 78, 169, 231, 275
BstNI CCWGG 1 cut(s) 141
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 4 cut(s) 139, 310, 366, 367
BstV1I GCAGC 2 cut(s) 4, 135
BsuI GTATCC 2 cut(s) 279, 343
BsuRI GGCC 1 cut(s) 157
Cac8I GCNNGC 5 cut(s) 83, 155, 165, 210, 267
CfoI GCGC 1 cut(s) 378
Cfr9I CCCGGG 1 cut(s) 367
CviAII CATG 2 cut(s) 31, 56
DdeI CTNAG 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 155
Eco24I GRGCYC 2 cut(s) 259, 323
Eco88I CYCGRG 1 cut(s) 367
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 139
EcoT38I GRGCYC 2 cut(s) 259, 323
FaeI CATG 2 cut(s) 34, 59
FaiI YATR 3 cut(s) 32, 57, 109
FatI CATG 2 cut(s) 30, 55
Fnu4HI GCNGC 3 cut(s) 18, 124, 374
FriOI GRGCYC 2 cut(s) 259, 323
Fsp4HI GCNGC 3 cut(s) 18, 124, 374
FspBI CTAG 1 cut(s) 382
GlaI GCGC 1 cut(s) 377
GluI GCNGC 3 cut(s) 18, 124, 374
GsaI CCCAGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 1 cut(s) 157
HapII CCGG 3 cut(s) 158, 312, 368
HhaI GCGC 1 cut(s) 378
Hin1II CATG 2 cut(s) 34, 59
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 2 cut(s) 263, 327
HpaII CCGG 3 cut(s) 158, 312, 368
Hpy188I TCNGA 2 cut(s) 97, 240
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 274, 338
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 59, 278, 342
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 78, 169, 231, 275
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 2 cut(s) 34, 59
HspAI GCGC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 2 cut(s) 4, 135
MaeI CTAG 1 cut(s) 382
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 259, 323
MluCI AATT 1 cut(s) 127
MnlI CCTC 2 cut(s) 109, 162
MspI CCGG 3 cut(s) 158, 312, 368
MspR9I CCNGG 4 cut(s) 141, 312, 368, 369
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 5 cut(s) 17, 78, 169, 231, 275
NciI CCSGG 3 cut(s) 312, 368, 369
NlaIII CATG 2 cut(s) 34, 59
PkrI GCNGC 3 cut(s) 19, 125, 375
Ppu21I YACGTR 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 139
SatI GCNGC 3 cut(s) 18, 124, 374
ScrFI CCNGG 4 cut(s) 141, 312, 368, 369
SduI GDGCHC 2 cut(s) 259, 323
SetI ASST 6 cut(s) 114, 145, 150, 165, 267, 331
SmaI CCCGGG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 260, 324
SmoI CTYRAG 2 cut(s) 260, 324
Sse9I AATT 1 cut(s) 127
SsiI CCGC 1 cut(s) 373
SspMI CTAG 1 cut(s) 382
StyD4I CCNGG 4 cut(s) 139, 310, 366, 367
TaaI ACNGT 2 cut(s) 274, 338
TaiI ACGT 1 cut(s) 114
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 376
TseI GCWGC 2 cut(s) 17, 123
TspDTI ATGAA 1 cut(s) 44
TspMI CCCGGG 1 cut(s) 367
XmaI CCCGGG 1 cut(s) 367
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.