Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012027

Physical Location & Seq

Genomic Coordinates Forward (+)

47571860 .. 47574329

Gene Structure 2470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCATTCAGTACCAATCTCCTTGCCGCCGTCTTCACCGCCATGTTATTCATGCTGACATTCCACAGCTGCGGCGTGTCGGCACAGGCGCCCGGGCCAGCTCCGGAGGCGTCGGTTGATTGCTCCACGCAGCTGCTGACGTTGTCGGACTGCCTGACGTACGTGGAGGAAGGTAGCAACTTGACGAAGCCGGACAAGGCTTGCTGCCCTGAGCTGGCGGCGCTGGTGAAAAGCACCCCCCAATGCTTGTGCTACTTGCTTCAGAAGAACAGTACCAGCAGCTACGGCATTCAAATCGACATGAACAAAGCTCTTGATCTCCCTTCTGTTTGCAAAGTTGAGACTCCTCCTACCAGCGCCTGTGCACTTCTTGGAATACCAGTGGCTTCTGAAGGGCCTACTGCTAACTCACCTGCTGGTTCGGAGCTAGCACCTCAAGGACCTTCTGCTTCCCCGGGAAACCAAACAGACCATGGAACTTCAACTACTGCTAAATCCCTTATGGCACTCTTTATTGGCTTAGCTATAGCATCTCTTCCTACATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0008289 GO:0010876 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

183

Amino Acids

18.79

Weight (kDa)

4.63

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	27 - 121	2.2e-18	Probable lipid transfer
Tryp_alpha_amyl	PF00234	41 - 121	4.8e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27130 AT3G43720 AT3G43720
fragaria_vesca	FvH4_3g27100 FvH4_3g27100
malus_domestica	MD11G1179700.v1.1
prunus_persica	Prupe.6G152000_v2.0.a1
pyrus_communis	pycom03g11600 pycom11g15500
rosa_chinensis	RchiOBHm_Chr5g0049721
rosa_laevigata	RLG00000034634
rosa_multiflora	Rmu_sc0005835.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031610
rosa_rugosa	Rorug05G0250500
rosa_samantha	Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana	Rw5G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	4 cut(s)	27, 39, 72, 218
AcuI	CTGAAG	2 cut(s)	245, 411
AcyI	GRCGYC	2 cut(s)	89, 110
AfaI	GTAC	3 cut(s)	13, 161, 274
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	293, 483
AluBI	AGCT	8 cut(s)	69, 101, 133, 214, 282, 311, 427, 524
AluI	AGCT	8 cut(s)	69, 101, 133, 214, 282, 311, 427, 524
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	335
Alw44I	GTGCAC	1 cut(s)	363
AlwNI	CAGNNNCTG	2 cut(s)	136, 360
Ama87I	CYCGRG	2 cut(s)	92, 454
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	2 cut(s)	95, 395
ApaLI	GTGCAC	1 cut(s)	363
ApeKI	GCWGC	5 cut(s)	69, 130, 133, 204, 279
AspLEI	GCGC	3 cut(s)	91, 223, 359
AspS9I	GGNCC	3 cut(s)	95, 395, 440
AsuC2I	CCSGG	4 cut(s)	93, 94, 455, 456
AsuHPI	GGTGA	3 cut(s)	28, 238, 402
AsuNHI	GCTAGC	1 cut(s)	427
AvaI	CYCGRG	2 cut(s)	92, 454
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	5 cut(s)	56, 120, 142, 191, 291
BceAI	ACGGC	2 cut(s)	14, 301
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BcnI	CCSGG	4 cut(s)	93, 94, 455, 456
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	525
BfoI	RGCGCY	3 cut(s)	92, 224, 360
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
BlpI	GCTNAGC	1 cut(s)	520
BlsI	GCNGC	8 cut(s)	28, 71, 74, 132, 135, 206, 220, 281
Bme1390I	CCNGG	4 cut(s)	93, 94, 455, 456
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	2 cut(s)	92, 454
BmgT120I	GGNCC	3 cut(s)	95, 395, 440
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	4 cut(s)	93, 94, 455, 456
BmsI	GCATC	1 cut(s)	539
BmtI	GCTAGC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	4 cut(s)	93, 94, 455, 456
BsaAI	YACGTR	1 cut(s)	163
BsaHI	GRCGYC	2 cut(s)	89, 110
BsaJI	CCNNGG	4 cut(s)	92, 453, 454, 472
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	4 cut(s)	92, 453, 454, 472
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	5 cut(s)	56, 120, 142, 191, 291
BshFI	GGCC	2 cut(s)	97, 397
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	2 cut(s)	92, 454
BsiSI	CCGG	4 cut(s)	93, 104, 191, 455
BsiWI	CGTACG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	335
BsmI	GAATGC	2 cut(s)	5, 288
BsnI	GGCC	2 cut(s)	97, 397
BsoBI	CYCGRG	2 cut(s)	92, 454
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	520
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	4 cut(s)	27, 39, 72, 218
BspANI	GGCC	2 cut(s)	97, 397
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	4 cut(s)	92, 453, 454, 472
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	89, 110
BssT1I	CCWWGG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	2 cut(s)	89, 110
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	4 cut(s)	99, 202, 216, 429
BstDEI	CTNAG	2 cut(s)	210, 520
BstDSI	CCRYGG	1 cut(s)	472
BstH2I	RGCGCY	3 cut(s)	92, 224, 360
BstHHI	GCGC	3 cut(s)	91, 223, 359
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 220, 285
BstSCI	CCNGG	4 cut(s)	91, 92, 453, 454
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	5 cut(s)	56, 120, 142, 191, 291
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	97, 397
BtgI	CCRYGG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	4 cut(s)	99, 202, 216, 429
CaiI	CAGNNNCTG	2 cut(s)	136, 360
CfoI	GCGC	3 cut(s)	91, 223, 359
Cfr13I	GGNCC	3 cut(s)	95, 395, 440
Cfr9I	CCCGGG	2 cut(s)	92, 454
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	12, 160, 273
CviAII	CATG	4 cut(s)	43, 52, 301, 473
CviQI	GTAC	3 cut(s)	12, 160, 273
DdeI	CTNAG	2 cut(s)	210, 520
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	245, 411
Eco88I	CYCGRG	2 cut(s)	92, 454
EcoO109I	RGGNCCY	2 cut(s)	395, 440
EcoT14I	CCWWGG	1 cut(s)	472
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	4 cut(s)	46, 55, 304, 476
FaiI	YATR	6 cut(s)	44, 53, 302, 474, 503, 527
FatI	CATG	4 cut(s)	42, 51, 300, 472
Fnu4HI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
Fsp4HI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	3 cut(s)	90, 222, 358
GluI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
HaeII	RGCGCY	3 cut(s)	92, 224, 360
HaeIII	GGCC	2 cut(s)	97, 397
HapII	CCGG	4 cut(s)	93, 104, 191, 455
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	3 cut(s)	91, 223, 359
Hin1I	GRCGYC	2 cut(s)	89, 110
Hin1II	CATG	4 cut(s)	46, 55, 304, 476
Hin6I	GCGC	3 cut(s)	89, 221, 357
HinP1I	GCGC	3 cut(s)	89, 221, 357
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	4 cut(s)	93, 104, 191, 455
HphI	GGTGA	3 cut(s)	28, 238, 402
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	5 cut(s)	148, 264, 391, 424, 551
Hpy188III	TCNNGA	2 cut(s)	104, 314
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	4 cut(s)	164, 333, 386, 453
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	3 cut(s)	140, 158, 162
HpyCH4V	TGCA	2 cut(s)	333, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 220, 285
HpyF3I	CTNAG	2 cut(s)	210, 520
HpySE526I	ACGT	3 cut(s)	140, 158, 162
Hsp92I	GRCGYC	2 cut(s)	89, 110
Hsp92II	CATG	4 cut(s)	46, 55, 304, 476
HspAI	GCGC	3 cut(s)	89, 221, 357
KasI	GGCGCC	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	3 cut(s)	106, 128, 424
Lsp1109I	GCAGC	5 cut(s)	56, 120, 142, 191, 291
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	3 cut(s)	140, 158, 162
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	25, 277, 527
MhlI	GDGCHC	1 cut(s)	367
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	100, 160, 357, 444
MroI	TCCGGA	1 cut(s)	103
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	69, 133
MspI	CCGG	4 cut(s)	93, 104, 191, 455
MspR9I	CCNGG	4 cut(s)	93, 94, 455, 456
Mva1269I	GAATGC	2 cut(s)	5, 288
MwoI	GCNNNNNNNGC	3 cut(s)	107, 220, 285
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	4 cut(s)	93, 94, 455, 456
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	46, 55, 304, 476
NlaIV	GGNNCC	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	421
PctI	GAATGC	2 cut(s)	5, 288
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	8 cut(s)	28, 71, 74, 132, 135, 206, 220, 281
PleI	GAGTC	1 cut(s)	337
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	3 cut(s)	95, 395, 440
PspPPI	RGGWCCY	1 cut(s)	440
PsrI	GAACNNNNNNTAC	2 cut(s)	469, 501
PstNI	CAGNNNCTG	2 cut(s)	136, 360
PsyI	GACNNNGTC	1 cut(s)	142
PvuII	CAGCTG	2 cut(s)	69, 133
RsaI	GTAC	3 cut(s)	13, 161, 274
RsaNI	GTAC	3 cut(s)	12, 160, 273
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	8 cut(s)	27, 70, 73, 131, 134, 205, 219, 280
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	3 cut(s)	95, 395, 440
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	4 cut(s)	93, 94, 455, 456
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	525
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	440
SmaI	CCCGGG	2 cut(s)	94, 456
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SrfI	GCCCGGGC	1 cut(s)	94
SsiI	CCGC	4 cut(s)	27, 39, 72, 218
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	4 cut(s)	91, 92, 453, 454
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	3 cut(s)	143, 161, 165
TaqI	TCGA	1 cut(s)	297
TauI	GCSGC	3 cut(s)	29, 75, 221
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	5 cut(s)	69, 130, 133, 204, 279
TspDTI	ATGAA	2 cut(s)	40, 317
TspMI	CCCGGG	2 cut(s)	92, 454
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmaI	CCCGGG	2 cut(s)	92, 454
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.