Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012027

Physical Location & Seq

Genomic Coordinates Forward (+)

13199423 .. 13201998

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGCAGAGCCATCATGTTGTTGATGATGATGACTACGACGACAATGCTACATGCCGTTTTGGGGCAGGAGGCCCCGGCTCCGGCTCCGGGGCCGGCGTCGCCGGATTGCCAAACGGCCGTTCTGGGGCTGGCGGATTGCCTGTCGTATGTGATGCCAGGCAGCAATTTGACAAAGCCGGACAAGCCGTGCTGCCCTGAGCTGGCGGAGCTAGTGAAAGACAACCCAATCTGCTTGTGCAGTTTGCTGGCCAACAGCAACAGCAGCAACAGCGTCGGCCTTGAAATTGATGTCAACAGGGCTCTTAAGCTTCCCACTGTTTGCAAGGTTTCGACGCCCCCTCCTAGCACCTGCGAACTTCTTGGAATTCCAGTGGGAGCTCCCACAGCTTCTGAAGCGCCAGCTAACTCTCCTGGTTCAGGGCTTACACCTCAAGGACCCTCTGCTGCCACTTCACCAAAGAGTGGAGCTTCAAAGACTGCCAACTCTGTTATGGCTTTCCTTGCTGGCTTAGTTATTGCAGTTCTTCCCATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0008289 GO:0010876 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

180

Amino Acids

18.06

Weight (kDa)

5.24

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27130 AT3G43720 AT3G43720
fragaria_vesca	FvH4_3g27100 FvH4_3g27100
malus_domestica	MD11G1179700.v1.1
prunus_persica	Prupe.6G152000_v2.0.a1
pyrus_communis	pycom03g11600 pycom11g15500
rosa_chinensis	RchiOBHm_Chr5g0049721
rosa_laevigata	RLG00000034634
rosa_multiflora	Rmu_sc0005835.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031610
rosa_rugosa	Rorug05G0250500
rosa_samantha	Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana	Rw5G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	2 cut(s)	134, 206
AcoI	YGGCCR	2 cut(s)	117, 249
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	414
AcyI	GRCGYC	2 cut(s)	98, 335
AfiI	CCNNNNNNNGG	7 cut(s)	63, 82, 89, 126, 202, 419, 464
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	284, 474
AjnI	CCWGG	2 cut(s)	157, 412
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	7 cut(s)	202, 211, 310, 380, 389, 404, 470
AluI	AGCT	7 cut(s)	202, 211, 310, 380, 389, 404, 470
Alw21I	GWGCWC	1 cut(s)	382
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	5 cut(s)	72, 92, 117, 249, 277
ApeKI	GCWGC	4 cut(s)	162, 192, 264, 446
ApoI	RAATTY	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	3 cut(s)	73, 92, 437
AsuC2I	CCSGG	2 cut(s)	77, 90
AsuHPI	GGTGA	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	304, 382
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	4 cut(s)	174, 179, 276, 433
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	4 cut(s)	41, 104, 132, 172
BcgI	CGANNNNNNTGC	4 cut(s)	28, 62, 256, 290
BciT130I	CCWGG	2 cut(s)	159, 414
BcnI	CCSGG	2 cut(s)	77, 90
BfaI	CTAG	2 cut(s)	212, 345
BfoI	RGCGCY	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	4 cut(s)	163, 193, 265, 447
BlsI	GCNGC	4 cut(s)	164, 194, 266, 448
Bme1390I	CCNGG	4 cut(s)	77, 90, 159, 414
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	73, 92, 437
BmiI	GGNNCC	5 cut(s)	75, 81, 87, 93, 439
BmrFI	CCNGG	4 cut(s)	77, 90, 159, 414
BmsI	GCATC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	2 cut(s)	77, 90
BsaHI	GRCGYC	2 cut(s)	98, 335
BsaJI	CCNNGG	2 cut(s)	75, 89
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	7 cut(s)	63, 82, 89, 126, 202, 419, 464
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	159, 414
BseDI	CCNNGG	2 cut(s)	75, 89
BseLI	CCNNNNNNNGG	7 cut(s)	63, 82, 89, 126, 202, 419, 464
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	371
BseX3I	CGGCCG	1 cut(s)	117
BseXI	GCAGC	4 cut(s)	174, 179, 276, 433
BsgI	GTGCAG	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	5 cut(s)	74, 94, 119, 251, 279
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	6 cut(s)	77, 83, 89, 95, 104, 179
BslI	CCNNNNNNNGG	7 cut(s)	63, 82, 89, 126, 202, 419, 464
BsnI	GGCC	5 cut(s)	74, 94, 119, 251, 279
Bsp1286I	GDGCHC	2 cut(s)	304, 382
BspACI	CCGC	2 cut(s)	134, 206
BspANI	GGCC	5 cut(s)	74, 94, 119, 251, 279
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	5 cut(s)	75, 81, 87, 93, 439
BspMI	ACCTGC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	75, 89
BssNI	GRCGYC	2 cut(s)	98, 335
Bst2UI	CCWGG	2 cut(s)	159, 414
Bst4CI	ACNGT	1 cut(s)	319
BstACI	GRCGYC	2 cut(s)	98, 335
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	6 cut(s)	96, 132, 204, 249, 402, 508
BstDEI	CTNAG	2 cut(s)	198, 511
BstENI	CCTNNNNNAGG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	8 cut(s)	100, 184, 208, 264, 270, 386, 395, 503
BstNI	CCWGG	2 cut(s)	159, 414
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	4 cut(s)	75, 88, 157, 412
BstV1I	GCAGC	4 cut(s)	174, 179, 276, 433
BstZI	CGGCCG	1 cut(s)	117
BsuRI	GGCC	5 cut(s)	74, 94, 119, 251, 279
BtsIMutI	CAGTG	2 cut(s)	315, 378
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	6 cut(s)	96, 132, 204, 249, 402, 508
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	73, 92, 437
CseI	GACGC	3 cut(s)	87, 262, 343
CviAII	CATG	2 cut(s)	16, 53
DdeI	CTNAG	2 cut(s)	198, 511
EaeI	YGGCCR	2 cut(s)	117, 249
EagI	CGGCCG	1 cut(s)	117
EciI	GGCGGA	2 cut(s)	149, 221
Ecl136II	GAGCTC	1 cut(s)	380
EclXI	CGGCCG	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	304, 382
Eco47I	GGWCC	1 cut(s)	437
Eco52I	CGGCCG	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	380
EcoNI	CCTNNNNNAGG	1 cut(s)	417
EcoO109I	RGGNCCY	2 cut(s)	73, 437
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	157, 412
EcoT38I	GRGCYC	2 cut(s)	304, 382
FaeI	CATG	2 cut(s)	19, 56
FaiI	YATR	4 cut(s)	17, 54, 150, 494
FatI	CATG	2 cut(s)	15, 52
Fnu4HI	GCNGC	4 cut(s)	163, 193, 265, 447
FriOI	GRGCYC	2 cut(s)	304, 382
Fsp4HI	GCNGC	4 cut(s)	163, 193, 265, 447
FspBI	CTAG	2 cut(s)	212, 345
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	4 cut(s)	163, 193, 265, 447
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	5 cut(s)	74, 94, 119, 251, 279
HapII	CCGG	6 cut(s)	77, 83, 89, 95, 104, 179
HgaI	GACGC	3 cut(s)	87, 262, 343
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	2 cut(s)	98, 335
Hin1II	CATG	2 cut(s)	19, 56
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	308
HpaII	CCGG	6 cut(s)	77, 83, 89, 95, 104, 179
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	394
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	4 cut(s)	43, 103, 278, 337
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	240, 324, 521
HpyF10VI	GCNNNNNNNGC	8 cut(s)	100, 184, 208, 264, 270, 386, 395, 503
HpyF3I	CTNAG	2 cut(s)	198, 511
Hsp92I	GRCGYC	2 cut(s)	98, 335
Hsp92II	CATG	2 cut(s)	19, 56
HspAI	GCGC	1 cut(s)	398
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
LmnI	GCTCC	6 cut(s)	85, 91, 208, 377, 385, 467
Lsp1109I	GCAGC	4 cut(s)	174, 179, 276, 433
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	212, 345
MboII	GAAGA	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	304, 382
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	166, 285, 366
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	4 cut(s)	64, 351, 441, 451
Mox20I	TGGCCA	1 cut(s)	251
MroNI	GCCGGC	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	6 cut(s)	77, 83, 89, 95, 104, 179
MspR9I	CCNGG	4 cut(s)	77, 90, 159, 414
MvaI	CCWGG	2 cut(s)	159, 414
MwoI	GCNNNNNNNGC	8 cut(s)	100, 184, 208, 264, 270, 386, 395, 503
NaeI	GCCGGC	1 cut(s)	96
NciI	CCSGG	2 cut(s)	77, 90
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	19, 56
NlaIV	GGNNCC	5 cut(s)	75, 81, 87, 93, 439
NspI	RCATGY	1 cut(s)	56
PaqCI	CACCTGC	1 cut(s)	359
PdiI	GCCGGC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	164, 194, 266, 448
PpuMI	RGGWCCY	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	157, 412
PspGI	CCWGG	2 cut(s)	157, 412
PspN4I	GGNNCC	5 cut(s)	75, 81, 87, 93, 439
PspPI	GGNCC	3 cut(s)	73, 92, 437
PspPPI	RGGWCCY	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	163, 193, 265, 447
Sau96I	GGNCC	3 cut(s)	73, 92, 437
ScrFI	CCNGG	4 cut(s)	77, 90, 159, 414
SduI	GDGCHC	2 cut(s)	304, 382
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	305, 432
SmoI	CTYRAG	2 cut(s)	305, 432
Sse9I	AATT	3 cut(s)	166, 285, 366
SsiI	CCGC	2 cut(s)	134, 206
SspMI	CTAG	2 cut(s)	212, 345
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	4 cut(s)	75, 88, 157, 412
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	166, 285, 366
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	322, 378
TseI	GCWGC	4 cut(s)	162, 192, 264, 446
TspRI	CASTG	2 cut(s)	322, 378
Van91I	CCANNNNNTGG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	2 cut(s)	212, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.