Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012027

Physical Location & Seq

Genomic Coordinates Forward (+)

21803421 .. 21806923

Gene Structure 3503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1179700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCAAAGCCATTGTTGCTACCGGTTCCATCATGTTGTTGATGACAATACTTGTTCATGGCGTTTCAGCGCAGCCGGCACCAGCCCCGGCCCCGGCAACGACTGATTGCTACACGAGCCTGCTGGGGCTGTCAGATTGCCTGACGTACGTGGAGGAGGGAAGCAATTTGACCAAGCCAGATAAGCCGTGCTGTCCGGAGCTGGCGGGGCTCGTGAAGGACAACCCCGTCTGCTTGTGCTACTTGCTCGGCAACACCAGTAGCAGCTTAGGCTTTCAGATTGACACCAACAGGGCTCTCAAGCTTCCTACTGTTTGCAAAGTTGATACTCCCCCCGCTAGCACTTGCGCAGTTCTGGGAATCCCAGTGTCTGCTCCCATAGCTTCTGAAGGGCCGAACTCTCCTGATTTTGCCGGATCACCTCAAGGACCTGCTGCGGCTGCTGAAGGGCCGAACTCTCCTGATTTTGCGGAATCACCTCAAGGACCTGCTGCGGCTGCCGGTTCACCAGAAGCCAATAAAGATAAAAATGGAGCTTCGAGGACTGCTGACTCTGTTATTGCTCTCCTTGGTGGCTTAGCTATTGCAATTCTTCCCGCATTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0008289 GO:0010876 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

203

Amino Acids

20.18

Weight (kDa)

4.5

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	22 - 116	7.6e-20	Probable lipid transfer
Tryp_alpha_amyl	PF00234	37 - 116	6.9e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27130 AT3G43720 AT3G43720
fragaria_vesca	FvH4_3g27100 FvH4_3g27100
malus_domestica	MD11G1179700.v1.1
prunus_persica	Prupe.6G152000_v2.0.a1
pyrus_communis	pycom03g11600 pycom11g15500
rosa_chinensis	RchiOBHm_Chr5g0049721
rosa_laevigata	RLG00000034634
rosa_multiflora	Rmu_sc0005835.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031610
rosa_rugosa	Rorug05G0250500
rosa_samantha	Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana	Rw5G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc16I	TGCGCA	1 cut(s)	349
Acc36I	ACCTGC	2 cut(s)	439, 496
AccB1I	GGYRCC	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	6 cut(s)	206, 336, 437, 470, 494, 597
AclWI	GGATC	1 cut(s)	424
AcuI	CTGAAG	2 cut(s)	408, 465
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	23
AluBI	AGCT	6 cut(s)	202, 267, 304, 383, 536, 581
AluI	AGCT	6 cut(s)	202, 267, 304, 383, 536, 581
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	3 cut(s)	90, 392, 449
ApeKI	GCWGC	6 cut(s)	73, 264, 434, 440, 491, 497
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	73, 350
AspS9I	GGNCC	5 cut(s)	91, 392, 428, 449, 485
AsuC2I	CCSGG	2 cut(s)	89, 95
AsuHPI	GGTGA	3 cut(s)	411, 468, 498
AsuNHI	GCTAGC	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	428, 485
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	213, 298
BauI	CACGAG	2 cut(s)	115, 212
BbvI	GCAGC	6 cut(s)	85, 276, 421, 427, 478, 484
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	89, 95
BfaI	CTAG	1 cut(s)	339
BfuAI	ACCTGC	2 cut(s)	439, 496
BisI	GCNGC	8 cut(s)	74, 265, 435, 438, 441, 492, 495, 498
BlpI	GCTNAGC	1 cut(s)	577
BlsI	GCNGC	8 cut(s)	75, 266, 436, 439, 442, 493, 496, 499
Bme1390I	CCNGG	2 cut(s)	89, 95
Bme18I	GGWCC	2 cut(s)	428, 485
BmgT120I	GGNCC	5 cut(s)	91, 392, 428, 449, 485
BmiI	GGNNCC	3 cut(s)	28, 81, 93
BmrFI	CCNGG	2 cut(s)	89, 95
BmrI	ACTGGG	1 cut(s)	359
BmtI	GCTAGC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	268
Bpu1102I	GCTNAGC	1 cut(s)	577
BpuEI	CTTGAG	3 cut(s)	284, 408, 465
BpuMI	CCSGG	2 cut(s)	89, 95
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	87, 93, 568
BsaWI	WCCGGW	2 cut(s)	23, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	3 cut(s)	23, 76, 500
Bse1I	ACTGG	2 cut(s)	258, 365
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	87, 93, 568
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	258, 365
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	6 cut(s)	85, 276, 421, 427, 478, 484
BseYI	CCCAGC	1 cut(s)	124
BshFI	GGCC	3 cut(s)	92, 394, 451
BshNI	GGYRCC	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	23
BsiSI	CCGG	7 cut(s)	24, 77, 89, 95, 197, 414, 501
BsiWI	CGTACG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	3 cut(s)	92, 394, 451
Bsp1286I	GDGCHC	2 cut(s)	213, 298
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	416
Bsp1720I	GCTNAGC	1 cut(s)	577
BspACI	CCGC	6 cut(s)	206, 336, 437, 470, 494, 597
BspANI	GGCC	3 cut(s)	92, 394, 451
BspEI	TCCGGA	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	28, 81, 93
BspMI	ACCTGC	2 cut(s)	439, 496
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	79
BsrFI	RCCGGY	3 cut(s)	23, 76, 500
BsrI	ACTGG	2 cut(s)	258, 365
BssAI	RCCGGY	3 cut(s)	23, 76, 500
BssECI	CCNNGG	3 cut(s)	87, 93, 568
BssMI	GATC	1 cut(s)	416
BssSI	CACGAG	2 cut(s)	115, 212
BssT1I	CCWWGG	1 cut(s)	568
Bst2BI	CACGAG	2 cut(s)	115, 212
Bst4CI	ACNGT	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	4 cut(s)	78, 122, 204, 340
BstDEI	CTNAG	2 cut(s)	268, 577
BstHHI	GCGC	2 cut(s)	73, 350
BstKTI	GATC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	416
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 77, 117, 184, 208, 270, 380, 440, 497
BstSCI	CCNGG	2 cut(s)	87, 93
BstV1I	GCAGC	6 cut(s)	85, 276, 421, 427, 478, 484
BsuRI	GGCC	3 cut(s)	92, 394, 451
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	2 cut(s)	439, 496
Cac8I	GCNNGC	4 cut(s)	78, 122, 204, 340
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	2 cut(s)	73, 350
Cfr10I	RCCGGY	3 cut(s)	23, 76, 500
Cfr13I	GGNCC	5 cut(s)	91, 392, 428, 449, 485
Csp6I	GTAC	1 cut(s)	148
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	2 cut(s)	34, 59
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	268, 577
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	2 cut(s)	213, 298
Eco47I	GGWCC	2 cut(s)	428, 485
Eco57I	CTGAAG	2 cut(s)	408, 465
EcoO109I	RGGNCCY	2 cut(s)	428, 485
EcoT14I	CCWWGG	1 cut(s)	568
EcoT38I	GRGCYC	2 cut(s)	213, 298
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	2 cut(s)	37, 62
FaiI	YATR	3 cut(s)	35, 60, 380
FatI	CATG	2 cut(s)	33, 58
FauI	CCCGC	3 cut(s)	199, 343, 604
Fnu4HI	GCNGC	8 cut(s)	74, 265, 435, 438, 441, 492, 495, 498
FriOI	GRGCYC	2 cut(s)	213, 298
Fsp4HI	GCNGC	8 cut(s)	74, 265, 435, 438, 441, 492, 495, 498
FspBI	CTAG	1 cut(s)	339
FspI	TGCGCA	1 cut(s)	349
GlaI	GCGC	2 cut(s)	72, 349
GluI	GCNGC	8 cut(s)	74, 265, 435, 438, 441, 492, 495, 498
GsaI	CCCAGC	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	92, 394, 451
HapII	CCGG	7 cut(s)	24, 77, 89, 95, 197, 414, 501
HhaI	GCGC	2 cut(s)	73, 350
Hin1II	CATG	2 cut(s)	37, 62
Hin6I	GCGC	2 cut(s)	71, 348
HinP1I	GCGC	2 cut(s)	71, 348
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	3 cut(s)	360, 473, 551
HpaII	CCGG	7 cut(s)	24, 77, 89, 95, 197, 414, 501
HphI	GGTGA	3 cut(s)	411, 468, 498
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	4 cut(s)	136, 279, 388, 608
Hpy188III	TCNNGA	4 cut(s)	197, 214, 404, 461
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	3 cut(s)	211, 383, 440
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	2 cut(s)	146, 150
HpyCH4V	TGCA	2 cut(s)	318, 587
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 77, 117, 184, 208, 270, 380, 440, 497
HpyF3I	CTNAG	2 cut(s)	268, 577
HpySE526I	ACGT	2 cut(s)	146, 150
Hsp92II	CATG	2 cut(s)	37, 62
HspAI	GCGC	2 cut(s)	71, 348
Kpn2I	TCCGGA	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	416
LmnI	GCTCC	3 cut(s)	199, 379, 533
Lsp1109I	GCAGC	6 cut(s)	85, 276, 421, 427, 478, 484
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	2 cut(s)	146, 150
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	2 cut(s)	584, 595
MhlI	GDGCHC	2 cut(s)	213, 298
MluCI	AATT	2 cut(s)	166, 588
MlyI	GAGTC	1 cut(s)	545
MnlI	CCTC	5 cut(s)	148, 151, 432, 489, 534
MroI	TCCGGA	1 cut(s)	196
MroNI	GCCGGC	1 cut(s)	76
MspI	CCGG	7 cut(s)	24, 77, 89, 95, 197, 414, 501
MspR9I	CCNGG	2 cut(s)	89, 95
Mva1269I	GAATGC	1 cut(s)	599
MwoI	GCNNNNNNNGC	9 cut(s)	17, 77, 117, 184, 208, 270, 380, 440, 497
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	89, 95
NdeII	GATC	1 cut(s)	416
NgoMIV	GCCGGC	1 cut(s)	76
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	2 cut(s)	37, 62
NlaIV	GGNNCC	3 cut(s)	28, 81, 93
NmeAIII	GCCGAG	1 cut(s)	228
NsbI	TGCGCA	1 cut(s)	349
PctI	GAATGC	1 cut(s)	599
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	360, 473
Pfl23II	CGTACG	1 cut(s)	147
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	8 cut(s)	75, 266, 436, 439, 442, 493, 496, 499
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	151
PpuMI	RGGWCCY	2 cut(s)	428, 485
Psp5II	RGGWCCY	2 cut(s)	428, 485
PspFI	CCCAGC	1 cut(s)	124
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	28, 81, 93
PspPI	GGNCC	5 cut(s)	91, 392, 428, 449, 485
PspPPI	RGGWCCY	2 cut(s)	428, 485
PstNI	CAGNNNCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	8 cut(s)	74, 265, 435, 438, 441, 492, 495, 498
Sau3AI	GATC	1 cut(s)	416
Sau96I	GGNCC	5 cut(s)	91, 392, 428, 449, 485
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	2 cut(s)	89, 95
SduI	GDGCHC	2 cut(s)	213, 298
SinI	GGWCC	2 cut(s)	428, 485
SmlI	CTYRAG	3 cut(s)	299, 423, 480
SmoI	CTYRAG	3 cut(s)	299, 423, 480
Sse9I	AATT	2 cut(s)	166, 588
SsiI	CCGC	6 cut(s)	206, 336, 437, 470, 494, 597
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	87, 93
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	2 cut(s)	149, 153
TaqI	TCGA	1 cut(s)	539
TasI	AATT	2 cut(s)	166, 588
TauI	GCSGC	2 cut(s)	440, 497
TfiI	GAWTC	2 cut(s)	360, 473
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	6 cut(s)	73, 264, 434, 440, 491, 497
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	2 cut(s)	428, 485
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.