AT3G43720

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012027
Physical Location & Seq
Reverse (-)
15615386 .. 15617309
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43720.2

Sequence Viewer

Length: 582 bp
ATGTCTAACGTTGTAGTAATCGCCGTTGTTCTCATCGTAGCATCGCTAACAGGACATGTGTCAGCACAAATGGATATGTCTCCGTCGTCAGGACCATCGGGTGCACCAGACTGCATGGCGAACCTAATGAACATGACAGGCTGTCTCTCGTACGTTACGGTCGGAGAAGGTGGTGGTGCGGCCAAGCCGGACAAGACGTGTTGTCCGGCGCTAGCGGGGCTAGTGGAGAGCTCGCCGCAATGCTTATGTTACCTCCTCTCCGGTGACATGGCGGCACAACTTGGAATCAAGATTGATAAGGCAAAGGCTCTCAAACTTCCCGGAGTTTGCGGCGTGATCACTCCCGATCCTTCACTTTGTTCTCTTTTTGGAATTCCTGTTGGAGCACCTGTAGCTATGGGAGACGAGGGAGCCTCCCCAGCCTATGCTCCAGGTTCGATGTCAGGTGCAGAATCACCAGGAGGATTTGGGTCGGGTCCTTCGGCTAGTAGAGGGAGCGATGCACCAAGCAGTGCACCTTATTCTCTTTTTCTCAATCTTATAATTTTCCCATTAGCTTTTGCATTTTACATCTTTTGCTGA

Protein Analysis

193

Amino Acids

19.18

Weight (kDa)

4.51

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 26 - 120 1.2e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 38 - 117 3.9e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27130 AT3G43720 AT3G43720
fragaria_vesca FvH4_3g27100 FvH4_3g27100
malus_domestica MD11G1179700.v1.1
prunus_persica Prupe.6G152000_v2.0.a1
pyrus_communis pycom03g11600 pycom11g15500
rosa_chinensis RchiOBHm_Chr5g0049721
rosa_laevigata RLG00000034634
rosa_multiflora Rmu_sc0005835.1_g000001
rosa_roxburghii Rroxscaffold_1G00031610
rosa_rugosa Rorug05G0250500
rosa_samantha Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana Rw5G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AciI CCGC 5 cut(s) 179, 215, 236, 272, 330
AclI AACGTT 1 cut(s) 9
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 372
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 55, 197
AhdI GACNNNNNGTC 2 cut(s) 141, 201
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 2 cut(s) 430, 457
AluBI AGCT 3 cut(s) 231, 395, 557
AluI AGCT 3 cut(s) 231, 395, 557
Alw21I GWGCWC 4 cut(s) 106, 233, 388, 517
Alw26I GTCTC 3 cut(s) 84, 149, 396
Alw44I GTGCAC 2 cut(s) 102, 513
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 180
ApaLI GTGCAC 2 cut(s) 102, 513
ApoI RAATTY 1 cut(s) 372
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 92, 476
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 275, 447
AsuNHI GCTAGC 1 cut(s) 211
AvaII GGWCC 2 cut(s) 92, 476
BaeGI GKGCMC 2 cut(s) 106, 517
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 4 cut(s) 106, 233, 388, 517
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 2 cut(s) 432, 459
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 3 cut(s) 84, 149, 396
BfaI CTAG 3 cut(s) 212, 221, 486
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 212
BisI GCNGC 4 cut(s) 180, 236, 273, 331
BlsI GCNGC 4 cut(s) 181, 237, 274, 332
Bme1390I CCNGG 3 cut(s) 321, 432, 459
Bme18I GGWCC 2 cut(s) 92, 476
BmeRI GACNNNNNGTC 2 cut(s) 141, 201
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 92, 476
BmiI GGNNCC 2 cut(s) 412, 477
BmrFI CCNGG 3 cut(s) 321, 432, 459
BmsI GCATC 2 cut(s) 50, 490
BmtI GCTAGC 1 cut(s) 215
BoxI GACNNNNGTC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 398, 430
BpmI CTGGAG 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 321
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 432, 459
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 2 cut(s) 106, 517
BseYI CCCAGC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 4 cut(s) 106, 233, 388, 517
BsiSI CCGG 4 cut(s) 188, 206, 261, 321
BsiWI CGTACG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 3 cut(s) 84, 149, 396
BsmBI CGTCTC 1 cut(s) 396
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 4 cut(s) 106, 233, 388, 517
Bsp143I GATC 2 cut(s) 336, 346
BspACI CCGC 5 cut(s) 179, 215, 236, 272, 330
BspANI GGCC 1 cut(s) 182
BspLI GGNNCC 2 cut(s) 412, 477
BspOI GCTAGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 245
BssMI GATC 2 cut(s) 336, 346
Bst2UI CCWGG 2 cut(s) 432, 459
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 213, 233
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 339, 349
BstMAI GTCTC 3 cut(s) 84, 149, 396
BstMBI GATC 2 cut(s) 336, 346
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 217, 392, 419
BstNI CCWGG 2 cut(s) 432, 459
BstNSI RCATGY 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 319, 430, 457
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 2 cut(s) 106, 517
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 2 cut(s) 27, 513
BtrI CACGTC 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 213, 233
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 92, 476
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 56, 115, 133, 268
CviQI GTAC 1 cut(s) 151
DpnI GATC 2 cut(s) 338, 348
DpnII GATC 2 cut(s) 336, 346
DriI GACNNNNNGTC 2 cut(s) 141, 201
EaeI YGGCCR 1 cut(s) 180
Eam1105I GACNNNNNGTC 2 cut(s) 141, 201
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 92, 476
Eco53kI GAGCTC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 372
EcoRII CCWGG 2 cut(s) 430, 457
EcoT38I GRGCYC 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 4 cut(s) 59, 118, 136, 271
FaiI YATR 9 cut(s) 57, 77, 116, 134, 247, 269, 398, 426, 542
FatI CATG 4 cut(s) 55, 114, 132, 267
FauI CCCGC 1 cut(s) 208
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 4 cut(s) 180, 236, 273, 331
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 4 cut(s) 180, 236, 273, 331
FspBI CTAG 3 cut(s) 212, 221, 486
GlaI GCGC 1 cut(s) 210
GluI GCNGC 4 cut(s) 180, 236, 273, 331
GsaI CCCAGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 414
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 1 cut(s) 182
HapII CCGG 4 cut(s) 188, 206, 261, 321
HhaI GCGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 59, 118, 136, 271
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 2 cut(s) 285, 452
HpaII CCGG 4 cut(s) 188, 206, 261, 321
HphI GGTGA 2 cut(s) 275, 447
Hpy166II GTNNAC 2 cut(s) 104, 515
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 3 cut(s) 90, 289, 344
Hpy8I GTNNAC 2 cut(s) 104, 515
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 161, 360, 489
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 3 cut(s) 9, 153, 197
HpyCH4V TGCA 6 cut(s) 104, 114, 449, 503, 515, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 392, 419
HpySE526I ACGT 3 cut(s) 9, 153, 197
Hsp92II CATG 4 cut(s) 59, 118, 136, 271
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 2 cut(s) 336, 346
LmnI GCTCC 4 cut(s) 383, 410, 433, 495
LweI GCATC 2 cut(s) 50, 490
MaeI CTAG 3 cut(s) 212, 221, 486
MaeII ACGT 3 cut(s) 9, 153, 197
MaeIII GTNAC 3 cut(s) 154, 248, 263
MalI GATC 2 cut(s) 338, 348
MboI GATC 2 cut(s) 336, 346
MhlI GDGCHC 4 cut(s) 106, 233, 388, 517
MluCI AATT 2 cut(s) 372, 543
MmeI TCCRAC 2 cut(s) 142, 361
MnlI CCTC 6 cut(s) 263, 266, 400, 424, 455, 485
MspI CCGG 4 cut(s) 188, 206, 261, 321
MspR9I CCNGG 3 cut(s) 321, 432, 459
MvaI CCWGG 2 cut(s) 432, 459
MwoI GCNNNNNNNGC 3 cut(s) 217, 392, 419
NciI CCSGG 1 cut(s) 321
NdeII GATC 2 cut(s) 336, 346
NheI GCTAGC 1 cut(s) 211
NlaIII CATG 4 cut(s) 59, 118, 136, 271
NlaIV GGNNCC 2 cut(s) 412, 477
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 1 cut(s) 59
PciI ACATGT 1 cut(s) 55
PfeI GAWTC 2 cut(s) 285, 452
Pfl23II CGTACG 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 4 cut(s) 181, 237, 274, 332
PpuMI RGGWCCY 1 cut(s) 476
PscI ACATGT 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 58
PsiI TTATAA 1 cut(s) 542
Psp124BI GAGCTC 1 cut(s) 233
Psp1406I AACGTT 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 430, 457
PspFI CCCAGC 1 cut(s) 418
PspGI CCWGG 2 cut(s) 430, 457
PspLI CGTACG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 412, 477
PspPI GGNCC 2 cut(s) 92, 476
PspPPI RGGWCCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SacI GAGCTC 1 cut(s) 233
SatI GCNGC 4 cut(s) 180, 236, 273, 331
Sau3AI GATC 2 cut(s) 336, 346
Sau96I GGNCC 2 cut(s) 92, 476
ScrFI CCNGG 3 cut(s) 321, 432, 459
SduI GDGCHC 4 cut(s) 106, 233, 388, 517
SfaNI GCATC 2 cut(s) 50, 490
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 2 cut(s) 92, 476
Sse9I AATT 2 cut(s) 372, 543
SsiI CCGC 5 cut(s) 179, 215, 236, 272, 330
SspMI CTAG 3 cut(s) 212, 221, 486
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 3 cut(s) 319, 430, 457
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 3 cut(s) 12, 156, 200
TaqI TCGA 1 cut(s) 437
TasI AATT 2 cut(s) 372, 543
TauI GCSGC 4 cut(s) 182, 238, 275, 333
TfiI GAWTC 2 cut(s) 285, 452
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 143
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 517
VneI GTGCAC 2 cut(s) 102, 513
VpaK11BI GGWCC 2 cut(s) 92, 476
XapI RAATTY 1 cut(s) 372
XceI RCATGY 1 cut(s) 59
XspI CTAG 3 cut(s) 212, 221, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.