Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012027

Physical Location & Seq

Genomic Coordinates Reverse (-)

20187244 .. 20189396

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCATTCCCTACTCATCATCATCTCCTTATTGTGTTACTGATGATGCTCACAATATTCCACGGTTGCTCCTGCGTCTCGGCGCAGGCTCCGGGCCCTGCTCCGGAGGCGTCGACGGATTGCTCCTCGGAGCTGCTGACCATGTCGGACTGCCTGACGTACGTGGAGGAAGGCAGCAACTTGACCAAGCCGGACAAGGCTTGCTGCCCGGAGCTGGCTAAGCTGGTCAGCAACAGGCCCGTGTGCTTGTGTTACTTGCTTCAGAAGAACAGCACCAGCAGCTACGGCATTGAAATCGACTTGAACAAGGCTCTTGATCTCCCTTCTGTCTGCAAAGTCGACACCCCTCCTACTAGCGCCTGTGCTCTTCTTGGAATACCAGTGGAAGCTCCCATGGCTTCTGAAGGGCCTACTGCTAACTCACCTGCTGGTTCGGAGCAAGCACCTCAAGGACCTTCTTCTGCTTCCCCAGGAAACAGCGGACCTTCTTCAACTGCTGCTAAATCCCTCATGGCACTCTTTGTTGGCTTAGCTTTAGCATCTCTTCCTACATTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0008289 GO:0010876 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0033036 GO:0042335 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048856 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

187

Amino Acids

19.16

Weight (kDa)

4.87

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	27 - 121	8.1e-17	Probable lipid transfer
Tryp_alpha_amyl	PF00234	41 - 121	1.6e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27130 AT3G43720 AT3G43720
fragaria_vesca	FvH4_3g27100 FvH4_3g27100
malus_domestica	MD11G1179700.v1.1
prunus_persica	Prupe.6G152000_v2.0.a1
pyrus_communis	pycom03g11600 pycom11g15500
rosa_chinensis	RchiOBHm_Chr5g0049721
rosa_laevigata	RLG00000034634
rosa_multiflora	Rmu_sc0005835.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031610
rosa_rugosa	Rorug05G0250500
rosa_samantha	Rh5AG326700 Rh5BG337700 Rh5CG362300 Rh5DG350000
rosa_wichuraiana	Rw5G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AccI	GTMKAC	2 cut(s)	113, 339
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	1 cut(s)	480
AcuI	CTGAAG	2 cut(s)	245, 423
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	103, 214
AgsI	TTSAA	3 cut(s)	293, 304, 492
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	6 cut(s)	133, 214, 223, 282, 389, 533
AluI	AGCT	6 cut(s)	133, 214, 223, 282, 389, 533
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	3 cut(s)	94, 236, 407
ApaI	GGGCCC	1 cut(s)	98
ApeKI	GCWGC	5 cut(s)	133, 174, 204, 279, 497
AspLEI	GCGC	2 cut(s)	85, 359
AspS9I	GGNCC	6 cut(s)	94, 95, 237, 407, 452, 482
AsuC2I	CCSGG	2 cut(s)	93, 209
AsuHPI	GGTGA	1 cut(s)	414
AvaII	GGWCC	2 cut(s)	452, 482
BaeGI	GKGCMC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	5 cut(s)	120, 186, 191, 291, 484
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	471
BcnI	CCSGG	2 cut(s)	93, 209
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	5 cut(s)	134, 175, 205, 280, 498
BlpI	GCTNAGC	2 cut(s)	219, 529
BlsI	GCNGC	5 cut(s)	135, 176, 206, 281, 499
Bme1390I	CCNGG	3 cut(s)	93, 209, 471
Bme18I	GGWCC	2 cut(s)	452, 482
BmgT120I	GGNCC	6 cut(s)	94, 95, 237, 407, 452, 482
BmiI	GGNNCC	2 cut(s)	90, 96
BmrFI	CCNGG	3 cut(s)	93, 209, 471
BmsI	GCATC	2 cut(s)	36, 548
Bpu1102I	GCTNAGC	2 cut(s)	219, 529
BpuEI	CTTGAG	1 cut(s)	432
BpuMI	CCSGG	2 cut(s)	93, 209
BsaAI	YACGTR	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	61, 126, 393, 469
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 214
Bse1I	ACTGG	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	61, 126, 393, 469
BseLI	CCNNNNNNNGG	2 cut(s)	103, 214
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	5 cut(s)	120, 186, 191, 291, 484
BshFI	GGCC	3 cut(s)	96, 238, 409
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	4 cut(s)	92, 104, 191, 209
BsiWI	CGTACG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	103, 214
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	96, 238, 409
Bsp120I	GGGCCC	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	98, 367
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	2 cut(s)	219, 529
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	3 cut(s)	96, 238, 409
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	90, 96
BspMI	ACCTGC	1 cut(s)	433
BspQI	GCTCTTC	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	4 cut(s)	61, 126, 393, 469
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	372, 549
BstACI	GRCGYC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	4 cut(s)	87, 202, 216, 441
BstDEI	CTNAG	2 cut(s)	219, 529
BstDSI	CCRYGG	2 cut(s)	61, 393
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	2 cut(s)	85, 359
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 220, 279, 285, 395
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	3 cut(s)	91, 207, 469
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	5 cut(s)	120, 186, 191, 291, 484
BsuRI	GGCC	3 cut(s)	96, 238, 409
BtgI	CCRYGG	2 cut(s)	61, 393
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	4 cut(s)	87, 202, 216, 441
CfoI	GCGC	2 cut(s)	85, 359
Cfr13I	GGNCC	6 cut(s)	94, 95, 237, 407, 452, 482
CseI	GACGC	2 cut(s)	64, 99
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	142, 394, 511
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	219, 529
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	372, 549
EarI	CTCTTC	2 cut(s)	372, 549
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	2 cut(s)	452, 482
Eco57I	CTGAAG	2 cut(s)	245, 423
EcoO109I	RGGNCCY	3 cut(s)	95, 407, 452
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	3 cut(s)	145, 397, 514
FaiI	YATR	3 cut(s)	143, 395, 512
FatI	CATG	3 cut(s)	141, 393, 510
FblI	GTMKAC	2 cut(s)	113, 339
Fnu4HI	GCNGC	5 cut(s)	134, 175, 205, 280, 498
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	5 cut(s)	134, 175, 205, 280, 498
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	2 cut(s)	84, 358
GluI	GCNGC	5 cut(s)	134, 175, 205, 280, 498
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	96, 238, 409
HapII	CCGG	4 cut(s)	92, 104, 191, 209
HgaI	GACGC	2 cut(s)	64, 99
HhaI	GCGC	2 cut(s)	85, 359
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	145, 397, 514
Hin6I	GCGC	2 cut(s)	83, 357
HinP1I	GCGC	2 cut(s)	83, 357
HincII	GTYRAC	2 cut(s)	114, 340
HindII	GTYRAC	2 cut(s)	114, 340
HpaII	CCGG	4 cut(s)	92, 104, 191, 209
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	114, 340
Hpy188I	TCNGA	5 cut(s)	130, 148, 264, 403, 436
Hpy188III	TCNNGA	2 cut(s)	104, 314
Hpy8I	GTNNAC	2 cut(s)	114, 340
Hpy99I	CGWCG	2 cut(s)	115, 118
HpyAV	CCTTC	5 cut(s)	164, 333, 398, 465, 495
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	2 cut(s)	158, 162
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 220, 279, 285, 395
HpyF3I	CTNAG	2 cut(s)	219, 529
HpySE526I	ACGT	2 cut(s)	158, 162
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	145, 397, 514
HspAI	GCGC	2 cut(s)	83, 357
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	8 cut(s)	74, 94, 106, 128, 130, 211, 394, 436
Lsp1109I	GCAGC	5 cut(s)	120, 186, 191, 291, 484
LweI	GCATC	2 cut(s)	36, 548
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	158, 162
MaeIII	GTNAC	2 cut(s)	36, 251
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	5 cut(s)	277, 359, 450, 480, 536
MhlI	GDGCHC	2 cut(s)	98, 367
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	100, 136, 160, 357, 456, 518
MroI	TCCGGA	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	4 cut(s)	92, 104, 191, 209
MspR9I	CCNGG	3 cut(s)	93, 209, 471
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	5 cut(s)	107, 220, 279, 285, 395
NciI	CCSGG	2 cut(s)	93, 209
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	145, 397, 514
NlaIV	GGNNCC	2 cut(s)	90, 96
NmeAIII	GCCGAG	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	372
PctI	GAATGC	1 cut(s)	5
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	135, 176, 206, 281, 499
Ppu21I	YACGTR	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	90, 96
PspOMI	GGGCCC	1 cut(s)	94
PspPI	GGNCC	6 cut(s)	94, 95, 237, 407, 452, 482
PspPPI	RGGWCCY	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SalI	GTCGAC	2 cut(s)	112, 338
SapI	GCTCTTC	1 cut(s)	372
SatI	GCNGC	5 cut(s)	134, 175, 205, 280, 498
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	6 cut(s)	94, 95, 237, 407, 452, 482
ScrFI	CCNGG	3 cut(s)	93, 209, 471
SduI	GDGCHC	2 cut(s)	98, 367
SfaNI	GCATC	2 cut(s)	36, 548
SgrDI	CGTCGACG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	452, 482
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	91, 207, 469
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	2 cut(s)	161, 165
TaqI	TCGA	3 cut(s)	113, 297, 339
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	5 cut(s)	133, 174, 204, 279, 497
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	452, 482
XmiI	GTMKAC	2 cut(s)	113, 339
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.