Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Reverse (-)

11819728 .. 11822036

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCAACAAGAAATGCTTTGAGAATTGTGTCTCGTAGGTTCTCTAGTGGCAAAGTTCTTAGCGAAGAGGAGAGAGCCGCTGAGAATGTTTTCATTAAGAAAATGGAGCAGGAGAAGCTTCAGAAGTTAGCTCGACAGGGTCCTGGAGAACAAGCAGCAGGGTCAGCAAGCGAAGCAAAGGTTGCTGGTGCAACAGCATCTGCATCAGCTGAGTCGGGCCCAAAGGTGTCAGAAGACAAGAACAGAAACTATGCGGTTGTGGCAGGTGTGGTTGCTATTGTCGGTTCGATTGGTTGGTACTTGAAAGCAGGTGGAAAGAAGCAGCCAGAGGTCCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.95

Weight (kDa)

9.64

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	254, 299
Acc36I	ACCTGC	2 cut(s)	254, 299
AciI	CCGC	2 cut(s)	78, 254
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	3 cut(s)	118, 131, 209
AluI	AGCT	3 cut(s)	118, 131, 209
Alw26I	GTCTC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	217
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	155, 322
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	4 cut(s)	140, 217, 218, 331
AvaII	GGWCC	2 cut(s)	140, 331
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	167, 334
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	45
BfuAI	ACCTGC	2 cut(s)	254, 299
BisI	GCNGC	3 cut(s)	78, 156, 323
BlsI	GCNGC	3 cut(s)	79, 157, 324
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	140, 331
BmgT120I	GGNCC	4 cut(s)	140, 217, 218, 331
BmiI	GGNNCC	2 cut(s)	141, 219
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	206, 212
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	72, 201
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	167, 334
BshFI	GGCC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	219
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	221
BspACI	CCGC	2 cut(s)	78, 254
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	73, 202
BspLI	GGNNCC	2 cut(s)	141, 219
BspMI	ACCTGC	2 cut(s)	254, 299
Bst2UI	CCWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	59, 81, 210
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 164, 173, 182, 260
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	167, 334
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	219
BveI	ACCTGC	2 cut(s)	254, 299
Cac8I	GCNNGC	1 cut(s)	169
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	140, 217, 218, 331
Csp6I	GTAC	1 cut(s)	298
CviJI	RGCY	6 cut(s)	77, 118, 131, 209, 219, 325
CviKI_1	RGCY	6 cut(s)	77, 118, 131, 209, 219, 325
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	59, 81, 210
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	140, 331
Eco57I	CTGAAG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	221
FaiI	YATR	1 cut(s)	252
FalI	AAGNNNNNCTT	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	78, 156, 323
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	3 cut(s)	78, 156, 323
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	78, 156, 323
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	123, 232
HpyCH4V	TGCA	2 cut(s)	191, 203
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 164, 173, 182, 260
HpyF3I	CTNAG	3 cut(s)	59, 81, 210
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	8 cut(s)	95, 122, 129, 144, 156, 171, 249, 294
Lsp1109I	GCAGC	2 cut(s)	167, 334
LweI	GCATC	2 cut(s)	206, 212
MaeI	CTAG	1 cut(s)	45
MboII	GAAGA	2 cut(s)	77, 245
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	2 cut(s)	61, 322
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	2 cut(s)	80, 209
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	115, 164, 173, 182, 260
NlaIV	GGNNCC	2 cut(s)	141, 219
PaqCI	CACCTGC	2 cut(s)	254, 299
PdmI	GAANNNNTTC	1 cut(s)	89
PflFI	GACNNNGTC	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	79, 157, 324
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	141, 219
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	4 cut(s)	140, 217, 218, 331
PspPPI	RGGWCCY	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	78, 156, 323
Sau96I	GGNCC	4 cut(s)	140, 217, 218, 331
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	9 cut(s)	41, 120, 133, 183, 211, 228, 268, 313, 333
SfaNI	GCATC	2 cut(s)	206, 212
SinI	GGWCC	2 cut(s)	140, 331
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	78, 254
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	142
TaqI	TCGA	2 cut(s)	133, 287
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	2 cut(s)	155, 322
TspDTI	ATGAA	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	138
VpaK11BI	GGWCC	2 cut(s)	140, 331
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.