Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Forward (+)

38944495 .. 38949202

Gene Structure 4708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG339800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCCAATTCTTTTAGTCTAAATTTAGTTAAACTTTCAAACATATGTGCAAGATACATTTCTCAACTTCATGTTTCTGTTGTCTGCTTGTCTGCTTCTTTGTCATATGTCCAATCGAATCATGATATATATTCTGACTGTTTATGTGTACTGTTTCTCATATTGCAGAAAACTGAGCAAGAGAAGCTTGAGAAGCTTGCACGAAAGGGCCCTAAACCAGAAGAAAAAGCAACTGCAGGCCCAGGGGAATCAATAACTGATGCCAAACCAAGTGGTTCGAGCTCAACTGCCAATGTATCAACTGACAAGTACAGGAATTATGCTGTTGTAGCTGGTGTTATCACTGCTGCTGCTGCTTTGGGATGGTATATCAAAGGAAGTGAAAAGAAGGCAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.55

Weight (kDa)

8.32

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	2 cut(s)	150, 311
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	4 cut(s)	187, 196, 282, 332
AluI	AGCT	4 cut(s)	187, 196, 282, 332
Alw21I	GWGCWC	1 cut(s)	284
AoxI	GGCC	2 cut(s)	208, 238
ApaI	GGGCCC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	347, 350, 353
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	3 cut(s)	208, 209, 239
BaeGI	GKGCMC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	212, 284
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	334, 337, 340
BccI	CCATC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	3 cut(s)	348, 351, 354
BlsI	GCNGC	3 cut(s)	349, 352, 355
Bme1390I	CCNGG	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	208, 209, 239
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	241, 242
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	241, 242
BseGI	GGATG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	334, 337, 340
BshFI	GGCC	2 cut(s)	210, 240
BsiHKAI	GWGCWC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	210, 240
Bsp120I	GGGCCC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	212, 284
BspANI	GGCC	2 cut(s)	210, 240
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	241, 242
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	140, 153
BstC8I	GCNNGC	2 cut(s)	198, 238
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 193, 329, 353
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	334, 337, 340
BsuRI	GGCC	2 cut(s)	210, 240
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	198, 238
CciI	TCATGA	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	208, 209, 239
Csp6I	GTAC	2 cut(s)	149, 310
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	2 cut(s)	71, 122
CviJI	RGCY	6 cut(s)	187, 196, 210, 240, 282, 332
CviKI_1	RGCY	6 cut(s)	187, 196, 210, 240, 282, 332
CviQI	GTAC	2 cut(s)	149, 310
DdeI	CTNAG	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	212, 284
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	2 cut(s)	208, 209
EcoRII	CCWGG	1 cut(s)	241
EcoT38I	GRGCYC	2 cut(s)	212, 284
FaeI	CATG	2 cut(s)	74, 125
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	2 cut(s)	70, 121
FauNDI	CATATG	2 cut(s)	44, 106
Fnu4HI	GCNGC	3 cut(s)	348, 351, 354
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	2 cut(s)	212, 284
Fsp4HI	GCNGC	3 cut(s)	348, 351, 354
GluI	GCNGC	3 cut(s)	348, 351, 354
HaeIII	GGCC	2 cut(s)	210, 240
Hin1II	CATG	2 cut(s)	74, 125
HindIII	AAGCTT	2 cut(s)	185, 194
HinfI	GANTC	2 cut(s)	118, 248
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	2 cut(s)	140, 153
HpyCH4V	TGCA	5 cut(s)	50, 166, 200, 236, 400
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 193, 329, 353
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	74, 125
LpnPI	CCDG	7 cut(s)	222, 228, 231, 255, 298, 318, 386
Lsp1109I	GCAGC	3 cut(s)	334, 337, 340
LweI	GCATC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	2 cut(s)	212, 284
MluCI	AATT	3 cut(s)	7, 22, 316
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	184, 193, 329, 353
NdeI	CATATG	2 cut(s)	44, 106
NlaIII	CATG	2 cut(s)	74, 125
NlaIV	GGNNCC	1 cut(s)	210
PagI	TCATGA	1 cut(s)	121
PasI	CCCWGGG	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	118, 248
PkrI	GCNGC	3 cut(s)	349, 352, 355
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	210
PspOMI	GGGCCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	208, 209, 239
PstI	CTGCAG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	150, 311
RsaNI	GTAC	2 cut(s)	149, 310
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	3 cut(s)	348, 351, 354
Sau96I	GGNCC	3 cut(s)	208, 209, 239
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	212, 284
SetI	ASST	4 cut(s)	189, 198, 284, 334
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	7, 22, 316
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	140, 153
TaqI	TCGA	2 cut(s)	116, 278
TasI	AATT	3 cut(s)	7, 22, 316
TatI	WGTACW	2 cut(s)	148, 309
TfiI	GAWTC	2 cut(s)	118, 248
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	3 cut(s)	347, 350, 353
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.