Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Forward (+)

41548123 .. 41552743

Gene Structure 4621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG313500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCTGCTGCTTCTTTGTCATATGTCCGATCGAATCATGTTATATCTTCTGACTGTCTATGTTTACTGTTTCTCATATTGCAGAAAACTGAGCAAGAGAAGCTTGAGAAGCTTGCACGAAAGGGCCCTAAACCAGAAGACAAAGCAACTGCAGGCCCGGGGGAATCGATAACTGATGCCAAACCAAGTGATTCGAGCTCAACTGCCAAAGTATCAACTGACAAGTACAGGAATTATGCTGTTGTAGCTGGTGTTATGACTGCTGCTGCTGCTCTGGGATGGTATATCAAAGGAAGTGAAAAGAAGGCAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.45

Weight (kDa)

8.53

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	227
AluBI	AGCT	4 cut(s)	103, 112, 198, 248
AluI	AGCT	4 cut(s)	103, 112, 198, 248
Alw21I	GWGCWC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	124, 154
ApaI	GGGCCC	1 cut(s)	128
ApeKI	GCWGC	4 cut(s)	8, 263, 266, 269
AspS9I	GGNCC	3 cut(s)	124, 125, 155
AsuC2I	CCSGG	2 cut(s)	158, 159
AvaI	CYCGRG	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	128
BanII	GRGCYC	2 cut(s)	128, 200
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	250, 253, 256
BccI	CCATC	1 cut(s)	273
BcnI	CCSGG	2 cut(s)	158, 159
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	4 cut(s)	9, 264, 267, 270
BlsI	GCNGC	4 cut(s)	10, 265, 268, 271
Bme1390I	CCNGG	2 cut(s)	158, 159
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	3 cut(s)	124, 125, 155
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	2 cut(s)	158, 159
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	158, 159
Bsa29I	ATCGAT	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	157, 158
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	157, 158
BseGI	GGATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	250, 253, 256
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	126, 156
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	158
BsnI	GGCC	2 cut(s)	126, 156
BsoBI	CYCGRG	1 cut(s)	157
Bsp120I	GGGCCC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	128, 200
Bsp143I	GATC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	126, 156
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	157, 158
BssMI	GATC	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	56, 69
BstC8I	GCNNGC	2 cut(s)	114, 154
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	29
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 109, 245, 269
BstSCI	CCNGG	2 cut(s)	156, 157
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	250, 253, 256
BstV2I	GAAGAC	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	126, 156
BsuTUI	ATCGAT	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	114, 154
Cfr13I	GGNCC	3 cut(s)	124, 125, 155
Cfr9I	CCCGGG	1 cut(s)	157
ClaI	ATCGAT	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	6 cut(s)	103, 112, 126, 156, 198, 248
CviKI_1	RGCY	6 cut(s)	103, 112, 126, 156, 198, 248
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	128, 200
Eco53kI	GAGCTC	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	124, 125
EcoT38I	GRGCYC	2 cut(s)	128, 200
FaeI	CATG	1 cut(s)	41
FaiI	YATR	9 cut(s)	22, 24, 39, 44, 61, 77, 237, 257, 285
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FatI	CATG	1 cut(s)	37
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	9, 264, 267, 270
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	2 cut(s)	128, 200
Fsp4HI	GCNGC	4 cut(s)	9, 264, 267, 270
GluI	GCNGC	4 cut(s)	9, 264, 267, 270
HaeIII	GGCC	2 cut(s)	126, 156
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	1 cut(s)	41
HindIII	AAGCTT	2 cut(s)	101, 110
HinfI	GANTC	3 cut(s)	34, 164, 191
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	29, 52
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	56, 69
HpyCH4V	TGCA	4 cut(s)	82, 116, 152, 316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 109, 245, 269
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	138, 147, 171, 214, 234, 260, 302
Lsp1109I	GCAGC	3 cut(s)	250, 253, 256
LweI	GCATC	1 cut(s)	166
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	39, 149
MhlI	GDGCHC	2 cut(s)	128, 200
MluCI	AATT	1 cut(s)	232
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	158, 159
MwoI	GCNNNNNNNGC	4 cut(s)	100, 109, 245, 269
NciI	CCSGG	2 cut(s)	158, 159
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	34, 164, 191
PkrI	GCNGC	4 cut(s)	10, 265, 268, 271
Ple19I	CGATCG	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	126
PspOMI	GGGCCC	1 cut(s)	124
PspPI	GGNCC	3 cut(s)	124, 125, 155
PstI	CTGCAG	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	200
SatI	GCNGC	4 cut(s)	9, 264, 267, 270
Sau3AI	GATC	1 cut(s)	29
Sau96I	GGNCC	3 cut(s)	124, 125, 155
ScrFI	CCNGG	2 cut(s)	158, 159
SduI	GDGCHC	2 cut(s)	128, 200
SetI	ASST	4 cut(s)	105, 114, 200, 250
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	232
SstI	GAGCTC	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	156, 157
TaaI	ACNGT	2 cut(s)	56, 69
TaqI	TCGA	3 cut(s)	32, 167, 194
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	34, 164, 191
TseI	GCWGC	4 cut(s)	8, 263, 266, 269
TspMI	CCCGGG	1 cut(s)	157
XmaI	CCCGGG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.