Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Forward (+)

18136336 .. 18138602

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACATCAAGGATGGATGCAAGGTTTTTCTCTCGGAGGATGTCAAGTAGTGGAAAGATATTGAGCGAAGAGGAAAGAGCTGCAGAAAATGTTTATATCAAGGGTCCTAAACCAGAAGACAAAGCAACTGCAGGCCCGGGGGAATCGATAACTGATGCCAAGCCAAGTGGCTCAAGCTCAGGTTCTGGAGCATCAACTGCCAAAGTATCAACTGACAAGTACATGAATTATGTTGTTGTCGCGGGTGTTGTGACTGCTTTTGCTATCCTGGCATGGTATATGAAGGGAAGTGAAAAGAAGATAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.23

Weight (kDa)

8.89

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	80, 177
AluI	AGCT	2 cut(s)	80, 177
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	104, 134
AsuC2I	CCSGG	2 cut(s)	137, 138
AvaI	CYCGRG	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	2 cut(s)	137, 138
BfmI	CTRYAG	2 cut(s)	81, 129
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	3 cut(s)	137, 138, 269
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	104, 134
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	3 cut(s)	137, 138, 269
BmsI	GCATC	3 cut(s)	7, 145, 200
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	137, 138
Bsa29I	ATCGAT	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	136, 137
BseBI	CCWGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	136, 137
BseGI	GGATG	3 cut(s)	18, 22, 45
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	137
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	136
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	191
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	2 cut(s)	85, 133
BssECI	CCNNGG	2 cut(s)	136, 137
Bst2UI	CCWGG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	178
BstF5I	GGATG	3 cut(s)	18, 22, 45
BstFNI	CGCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 269
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	135, 136, 267
BstSFI	CTRYAG	2 cut(s)	81, 129
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	18, 22, 45
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	104, 134
Cfr9I	CCCGGG	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	2 cut(s)	223, 273
CviJI	RGCY	5 cut(s)	80, 135, 163, 171, 177
CviKI_1	RGCY	5 cut(s)	80, 135, 163, 171, 177
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	226, 276
FaiI	YATR	6 cut(s)	96, 224, 231, 274, 279, 281
FatI	CATG	2 cut(s)	222, 272
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	3 cut(s)	25, 29, 52
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	2 cut(s)	226, 276
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	20, 83, 131, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 269
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	226, 276
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	117, 126, 150, 165, 171, 254, 281, 296
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	3 cut(s)	7, 145, 200
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	80, 128, 310
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	2 cut(s)	30, 64
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	137, 138, 269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	197, 269
NciI	CCSGG	2 cut(s)	137, 138
NlaIII	CATG	2 cut(s)	226, 276
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	104, 134
PspPPI	RGGWCCY	1 cut(s)	104
PstI	CTGCAG	2 cut(s)	85, 133
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	2 cut(s)	104, 134
ScrFI	CCNGG	3 cut(s)	137, 138, 269
SetI	ASST	4 cut(s)	26, 82, 179, 184
SfaNI	GCATC	3 cut(s)	7, 145, 200
SfcI	CTRYAG	2 cut(s)	81, 129
SinI	GGWCC	1 cut(s)	104
SmaI	CCCGGG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	242
StyD4I	CCNGG	3 cut(s)	135, 136, 267
TaqI	TCGA	1 cut(s)	146
TasI	AATT	1 cut(s)	226
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	239, 296
TspMI	CCCGGG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	104
XmaI	CCCGGG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.