Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Forward (+)

17573810 .. 17578278

Gene Structure 4469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1166100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTGCAAGGTTTGTGCCTCGGAGGTTTTCAAGCAGTGGAAAAGTTCTCAGTGAGGAGGAAAAAGCTGCAGAGAATGTTTACATCAAGAAAATCGAGCAAGAGAAGCTGGAGAAGCTTGCACGTAAAGGCCCTAAACCAGAAGAGAAGCCAGCTGGAAGCTCAGGGGGCTCAGTCTCTGATGCCAAACCAAGTGCCTCTTCCTCTGGAGCATCAACAGCCAAGGTATCGACTGACAAGTACCGGAATTATGCTGTTGTAGCTGGTGTTATGACTGCTGCTGCTTCTGTCGGTTGGTATCTCAAAGCTAGTCGGAAGAAGGAAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.97

Weight (kDa)

9.66

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	7 cut(s)	68, 109, 118, 155, 162, 263, 308
AluI	AGCT	7 cut(s)	68, 109, 118, 155, 162, 263, 308
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	5, 68, 278, 281
AspS9I	GGNCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	55, 265, 268
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	4 cut(s)	6, 69, 279, 282
BlsI	GCNGC	4 cut(s)	7, 70, 280, 283
BmgT120I	GGNCC	1 cut(s)	131
BmsI	GCATC	2 cut(s)	172, 221
BpmI	CTGGAG	2 cut(s)	131, 228
Bpu10I	CCTNAGC	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	20, 222
BsaWI	WCCGGW	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	20, 222
BseMII	CTCAG	3 cut(s)	64, 177, 186
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	55, 265, 268
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	63, 176, 185
BspMAI	CTGCAG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	20, 222
BssT1I	CCWWGG	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	138, 205
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	120, 153
BstDEI	CTNAG	3 cut(s)	50, 163, 172
BstMAI	GTCTC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 115, 168, 218, 260
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	55, 265, 268
BsuRI	GGCC	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 58
Cac8I	GCNNGC	2 cut(s)	120, 153
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	241
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	50, 163, 172
Eam1104I	CTCTTC	2 cut(s)	138, 205
EarI	CTCTTC	2 cut(s)	138, 205
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	2 cut(s)	252, 272
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
Fnu4HI	GCNGC	4 cut(s)	6, 69, 279, 282
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	6, 69, 279, 282
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	4 cut(s)	6, 69, 279, 282
GsuI	CTGGAG	2 cut(s)	131, 228
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	116
HpaII	CCGG	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	24, 181, 315
Hpy188III	TCNNGA	2 cut(s)	88, 207
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	8, 71, 122, 331
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 115, 168, 218, 260
HpyF3I	CTNAG	3 cut(s)	50, 163, 172
HpySE526I	ACGT	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	9 cut(s)	95, 141, 150, 153, 165, 192, 249, 257, 317
Lsp1109I	GCAGC	3 cut(s)	55, 265, 268
LweI	GCATC	2 cut(s)	172, 221
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	124
MboII	GAAGA	4 cut(s)	155, 192, 328, 335
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	18, 30, 49, 52, 208, 214
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	5 cut(s)	106, 115, 168, 218, 260
PkrI	GCNGC	4 cut(s)	7, 70, 280, 283
Ppu21I	YACGTR	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SatI	GCNGC	4 cut(s)	6, 69, 279, 282
Sau96I	GGNCC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	172, 221
SfcI	CTRYAG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	96, 230
TasI	AATT	1 cut(s)	247
TscAI	CASTG	2 cut(s)	43, 58
TseI	GCWGC	4 cut(s)	5, 68, 278, 281
TspRI	CASTG	2 cut(s)	43, 58
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.