Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Forward (+)

23229352 .. 23235721

Gene Structure 6370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0223800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGGCTGAATCTCCTATACCAGAATCGGACCACAACATTCCGATTATTCCCGAAAGCCGGAAAAGAAAGTACACCGACGACGGCGACGAGGCAGCACCGTCGGGGCACCTAAAACGCATCGTTTTATCACTAAGCAAGCCGTCGACTCTGCTCGACATCGGCGCCACAAAACCTAGGGCGGTGCACCGCGCCAAGCTCGAAAAGCTTCTCCGGAAGCTCGTGATTCACCACAACTGGGTCGACGCCAGCGGCGTCCTCAGCGTGTTGCTCGGCGGCGGAGCCAGCGACAGGTCGCCGGCGAACAACCGCTTCATGTATTGGGTTTTGCTGGAAATGGTGGAGCGGTTGTCTGAGATGGAAAAGGAGGAGCGTTTGCCTGGTAATTACTCCAAGGAGGTGTGGATTAAGAATGTGTTTGAAGCTTGGGAGAAGAAGAATGGTAAGATGAAGGCAGAGTTAGAAGAGTACAGACATGCTGTTGAACTTGAGCGCATCTCGCTCTCGCTTGCAAAAGGGAATCTTATGGAAGCTGAAGCCGGTGCTTTCGGTATCATGCAACCAAATGGTTTTCGAAATGACCCTCTTCGAAATATGATTGTCGGATTGACATTCCAGAAATTGTGGTATTCCAAGCTCCCAAAAGAGATGCAGTGGAGGGAGGCTGACCAGTTTTACACTAGGGAATCAAATGAACTAGTTGCAGGCTCAGAGGGGCATGGCTCTATTAACAGTAACGAGGCTGGTAGCGCCATTCATTGTGATTCAGGCACCTCTGTCATGAATGATAAAGTAGAGAATGTACCACCTATTGTTGCTGTTGATGCTGACAGTGGCTTACATAGAGAGATCTCTGTGGAGGTTGATGACATGGAAGTAGAAATTTCTCCACCGAAATTTGAGACCCAAAATTTCTATGCAGACTCTGCTGAAAATTCAGAAGATGAAGCTGCTTTATCTGATCATGGTGGTCAAATGCAGTATGCTCCCATTTTCTCTGAACTTGAGGGGTTGGAGTCACTGTTACTGCCCATACGATTGCCAGAGTCTCTCGATAATCATGAAGATAAGAATATTTTTAATGACTATTACAAGGATGCAGTGAAGTACTTACGACATGCTCTTCACTCTTCACCCCCGGTATTGGTAGCCTTACATCCTTTGATACAGCTGTTGCTGATTGGAGGTCAAGTTAAAGAGGCCCTAGATGAGATTGAATATTGTTGTAATTTTTCAAACTCAGCGCTGCCTACTCGATTAAGGTCTAGTCTTCTGCAGCAATTTGATTCTAATAACAAACCTGTGCTTTCCACTTGTCTGGAGGAAAACTTAAGGAAGGATCCTACATGTTGCGATTCATTGGAAAAGCTTGTTCTGTTGCATCAAAATGATAATTATAGTCCTGAGTCCCTGCTTGAAATGATAGCTTTGCATTTAGATGCCACCAATGCTGAATACAACATATGGAGAGAGTATGCTATGTGTTTCCTGAAGCTTTCTCAGTATGAAGAGGACAGGATGTCGGTGTGTCTGAATGGAAATGAAGGTGGACATAAACCACGGTACTCTGTTTCTTTCAATAAGACCCCGAAAATATTTATAAAGGGACAATCTGGAAAGAATTGGAAATTGCGCTGTAGATGGTGGTCTACGCGGCACTTCAGCCATAATATTCTTGCATCAGAGATTGCAGCAGGTGATTTGGAGCTCTTAACTTACAAAGCAGCGAGTGCAGTGCATATGTATGGATCAGAGTTCTATTACGTTGTGGATGCTCGTTGTTGCTTAGAGAAAGAAAGTGAGAGGGACTTGCTCTGTTTTTTGCAAATGCACATTCAAAATTCTGTTCGAATTTATTCAAATTCTCGACAGAGAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

626

Amino Acids

71.09

Weight (kDa)

5.49

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF1_subA	PF14929	73 - 590	4.6e-71	TAF RNA Polymerase I subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1598
AarI	CACCTGC	1 cut(s)	1682
Acc36I	ACCTGC	1 cut(s)	1682
AccB1I	GGYRCC	3 cut(s)	105, 161, 767
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	3 cut(s)	143, 240, 1646
AccII	CGCG	2 cut(s)	189, 1651
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	8 cut(s)	179, 187, 249, 273, 276, 307, 343, 1651
AclWI	GGATC	3 cut(s)	1331, 1344, 1753
AcsI	RAATTY	7 cut(s)	879, 893, 907, 931, 1837, 1848, 1858
AcuI	CTGAAG	3 cut(s)	552, 1508, 1642
AcyI	GRCGYC	3 cut(s)	162, 243, 252
AfaI	GTAC	5 cut(s)	71, 467, 801, 1106, 1562
AfeI	AGCGCT	1 cut(s)	1242
AfiI	CCNNNNNNNGG	4 cut(s)	57, 235, 288, 1141
AflII	CTTAAG	1 cut(s)	1327
AflIII	ACRYGT	1 cut(s)	1343
AgsI	TTSAA	8 cut(s)	419, 482, 1214, 1233, 1415, 1576, 1835, 1857
AhdI	GACNNNNNGTC	1 cut(s)	1516
AhlI	ACTAGT	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	376
Alw21I	GWGCWC	2 cut(s)	186, 1707
Alw26I	GTCTC	2 cut(s)	893, 1050
Alw44I	GTGCAC	1 cut(s)	182
AlwI	GGATC	3 cut(s)	1331, 1344, 1753
AlwNI	CAGNNNCTG	1 cut(s)	923
Aor13HI	TCCGGA	1 cut(s)	210
Aor51HI	AGCGCT	1 cut(s)	1242
AoxI	GGCC	1 cut(s)	1197
ApaLI	GTGCAC	1 cut(s)	182
ApeKI	GCWGC	6 cut(s)	92, 947, 1243, 1273, 1688, 1721
ApoI	RAATTY	7 cut(s)	879, 893, 907, 931, 1837, 1848, 1858
Asp700I	GAANNNNTTC	2 cut(s)	204, 1852
AspA2I	CCTAGG	1 cut(s)	173
AspLEI	GCGC	6 cut(s)	164, 191, 492, 749, 1243, 1632
AspS9I	GGNCC	2 cut(s)	28, 1198
AsuC2I	CCSGG	1 cut(s)	1136
AsuHPI	GGTGA	3 cut(s)	218, 1122, 1706
AsuII	TTCGAA	3 cut(s)	571, 586, 1846
AvaII	GGWCC	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	108, 186
BaeI	ACNNNNGTAYC	2 cut(s)	1154, 1187
BamHI	GGATCC	1 cut(s)	1336
BanI	GGYRCC	3 cut(s)	105, 161, 767
BanII	GRGCYC	1 cut(s)	1707
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	1259
Bbv12I	GWGCWC	2 cut(s)	186, 1707
BbvCI	CCTCAGC	1 cut(s)	257
BbvI	GCAGC	6 cut(s)	104, 934, 1230, 1285, 1700, 1733
BccI	CCATC	2 cut(s)	349, 1632
BceAI	ACGGC	2 cut(s)	97, 124
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 1714, 1748
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	1136
BcoDI	GTCTC	2 cut(s)	893, 1050
BcuI	ACTAGT	1 cut(s)	694
BfaI	CTAG	5 cut(s)	174, 678, 695, 1202, 1263
BfmI	CTRYAG	2 cut(s)	1271, 1633
BfoI	RGCGCY	3 cut(s)	165, 750, 1244
BfrI	CTTAAG	1 cut(s)	1327
BfuAI	ACCTGC	1 cut(s)	1682
BglII	AGATCT	1 cut(s)	846
BisI	GCNGC	9 cut(s)	93, 250, 274, 948, 1244, 1274, 1652, 1689, 1722
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	9 cut(s)	94, 251, 275, 949, 1245, 1275, 1653, 1690, 1723
BmcAI	AGTACT	1 cut(s)	1106
Bme1390I	CCNGG	2 cut(s)	378, 1136
Bme18I	GGWCC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	1516
BmgT120I	GGNCC	2 cut(s)	28, 1198
BmiI	GGNNCC	5 cut(s)	107, 163, 280, 769, 1338
BmrFI	CCNGG	2 cut(s)	378, 1136
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	9 cut(s)	126, 501, 636, 811, 1084, 1387, 1426, 1685, 1759
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	1259
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	1337
Bpu10I	CCTNAGC	1 cut(s)	257
Bpu14I	TTCGAA	3 cut(s)	571, 586, 1846
BpuEI	CTTGAG	2 cut(s)	506, 1022
BpuMI	CCSGG	1 cut(s)	1136
BsaHI	GRCGYC	3 cut(s)	162, 243, 252
BsaI	GGTCTC	1 cut(s)	893
BsaJI	CCNNGG	4 cut(s)	173, 390, 1134, 1556
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	6 cut(s)	332, 362, 1004, 1034, 1173, 1203
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 235, 288, 1141
Bse118I	RCCGGY	2 cut(s)	295, 536
Bse1I	ACTGG	2 cut(s)	239, 667
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	173, 390, 1134, 1556
BseGI	GGATG	4 cut(s)	1099, 1153, 1521, 1774
BseLI	CCNNNNNNNGG	4 cut(s)	57, 235, 288, 1141
BseMII	CTCAG	6 cut(s)	271, 342, 720, 1251, 1392, 1511
BseNI	ACTGG	2 cut(s)	239, 667
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	2 cut(s)	108, 186
BseXI	GCAGC	6 cut(s)	104, 934, 1230, 1285, 1700, 1733
BsgI	GTGCAG	1 cut(s)	1749
Bsh1236I	CGCG	2 cut(s)	189, 1651
BshFI	GGCC	1 cut(s)	1199
BshNI	GGYRCC	3 cut(s)	105, 161, 767
BsiHKAI	GWGCWC	2 cut(s)	186, 1707
BsiSI	CCGG	5 cut(s)	58, 211, 296, 537, 1136
BslFI	GGGAC	3 cut(s)	1390, 1617, 1817
BslI	CCNNNNNNNGG	4 cut(s)	57, 235, 288, 1141
BsmAI	GTCTC	2 cut(s)	893, 1050
BsmFI	GGGAC	3 cut(s)	1390, 1617, 1817
BsnI	GGCC	1 cut(s)	1199
Bso31I	GGTCTC	1 cut(s)	893
Bsp119I	TTCGAA	3 cut(s)	571, 586, 1846
Bsp1286I	GDGCHC	3 cut(s)	108, 186, 1707
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	846, 958, 1336, 1745
BspACI	CCGC	8 cut(s)	179, 187, 249, 273, 276, 307, 343, 1651
BspANI	GGCC	1 cut(s)	1199
BspCNI	CTCAG	6 cut(s)	270, 343, 719, 1250, 1393, 1510
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	2 cut(s)	189, 1651
BspHI	TCATGA	2 cut(s)	777, 1057
BspLI	GGNNCC	5 cut(s)	107, 163, 280, 769, 1338
BspMAI	CTGCAG	1 cut(s)	1275
BspMI	ACCTGC	1 cut(s)	1682
BspPI	GGATC	3 cut(s)	1331, 1344, 1753
BspQI	GCTCTTC	1 cut(s)	1125
BspT104I	TTCGAA	3 cut(s)	571, 586, 1846
BspT107I	GGYRCC	3 cut(s)	105, 161, 767
BspTI	CTTAAG	1 cut(s)	1327
BspTNI	GGTCTC	1 cut(s)	893
BsrBI	CCGCTC	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	295, 536
BsrI	ACTGG	2 cut(s)	239, 667
BssAI	RCCGGY	2 cut(s)	295, 536
BssECI	CCNNGG	4 cut(s)	173, 390, 1134, 1556
BssMI	GATC	4 cut(s)	846, 958, 1336, 1745
BssNI	GRCGYC	3 cut(s)	162, 243, 252
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	173, 390
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	5 cut(s)	99, 731, 830, 1020, 1560
Bst6I	CTCTTC	5 cut(s)	456, 588, 1125, 1132, 1500
BstACI	GRCGYC	3 cut(s)	162, 243, 252
BstAFI	CTTAAG	1 cut(s)	1327
BstAPI	GCANNNNNTGC	2 cut(s)	923, 1727
BstBI	TTCGAA	3 cut(s)	571, 586, 1846
BstC8I	GCNNGC	6 cut(s)	137, 247, 283, 297, 507, 703
BstDEI	CTNAG	8 cut(s)	131, 257, 351, 706, 1237, 1401, 1497, 1783
BstDSI	CCRYGG	1 cut(s)	1556
BstF5I	GGATG	4 cut(s)	1099, 1153, 1521, 1774
BstFNI	CGCG	2 cut(s)	189, 1651
BstH2I	RGCGCY	3 cut(s)	165, 750, 1244
BstHHI	GCGC	6 cut(s)	164, 191, 492, 749, 1243, 1632
BstKTI	GATC	4 cut(s)	849, 961, 1339, 1748
BstMAI	GTCTC	2 cut(s)	893, 1050
BstMBI	GATC	4 cut(s)	846, 958, 1336, 1745
BstMWI	GCNNNNNNNGC	9 cut(s)	202, 258, 282, 496, 746, 821, 923, 1445, 1727
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	3 cut(s)	476, 1118, 1347
BstSCI	CCNGG	2 cut(s)	376, 1134
BstSFI	CTRYAG	2 cut(s)	1271, 1633
BstSLI	GKGCMC	2 cut(s)	108, 186
BstUI	CGCG	2 cut(s)	189, 1651
BstV1I	GCAGC	6 cut(s)	104, 934, 1230, 1285, 1700, 1733
BstV2I	GAAGAC	1 cut(s)	1259
BstX2I	RGATCY	2 cut(s)	846, 1336
BstXI	CCANNNNNNTGG	1 cut(s)	1315
BstYI	RGATCY	2 cut(s)	846, 1336
BsuRI	GGCC	1 cut(s)	1199
BtgI	CCRYGG	1 cut(s)	1556
BtsCI	GGATG	4 cut(s)	1099, 1153, 1521, 1774
BtsI	GCAGTG	3 cut(s)	656, 1104, 1737
BtsIMutI	CAGTG	5 cut(s)	656, 835, 1016, 1104, 1737
BveI	ACCTGC	1 cut(s)	1682
Cac8I	GCNNGC	6 cut(s)	137, 247, 283, 297, 507, 703
CaiI	CAGNNNCTG	1 cut(s)	923
CciI	TCATGA	2 cut(s)	777, 1057
CfoI	GCGC	6 cut(s)	164, 191, 492, 749, 1243, 1632
Cfr10I	RCCGGY	2 cut(s)	295, 536
Cfr13I	GGNCC	2 cut(s)	28, 1198
CseI	GACGC	2 cut(s)	241, 251
Csp6I	GTAC	5 cut(s)	70, 466, 800, 1105, 1561
CviQI	GTAC	5 cut(s)	70, 466, 800, 1105, 1561
DdeI	CTNAG	8 cut(s)	131, 257, 351, 706, 1237, 1401, 1497, 1783
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	4 cut(s)	848, 960, 1338, 1747
DpnII	GATC	4 cut(s)	846, 958, 1336, 1745
DriI	GACNNNNNGTC	1 cut(s)	1516
Eam1104I	CTCTTC	5 cut(s)	456, 588, 1125, 1132, 1500
Eam1105I	GACNNNNNGTC	1 cut(s)	1516
EarI	CTCTTC	5 cut(s)	456, 588, 1125, 1132, 1500
EciI	GGCGGA	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	1705
Eco130I	CCWWGG	2 cut(s)	173, 390
Eco24I	GRGCYC	1 cut(s)	1707
Eco31I	GGTCTC	1 cut(s)	893
Eco47I	GGWCC	1 cut(s)	28
Eco47III	AGCGCT	1 cut(s)	1242
Eco53kI	GAGCTC	1 cut(s)	1705
Eco57I	CTGAAG	3 cut(s)	552, 1508, 1642
EcoICRI	GAGCTC	1 cut(s)	1705
EcoO109I	RGGNCCY	1 cut(s)	1198
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	173, 390
EcoT38I	GRGCYC	1 cut(s)	1707
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	173, 390
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	3 cut(s)	1390, 1617, 1817
FauNDI	CATATG	2 cut(s)	1460, 1737
FbaI	TGATCA	1 cut(s)	958
FblI	GTMKAC	3 cut(s)	143, 240, 1646
Fnu4HI	GCNGC	9 cut(s)	93, 250, 274, 948, 1244, 1274, 1652, 1689, 1722
FokI	GGATG	4 cut(s)	1106, 1140, 1528, 1781
FriOI	GRGCYC	1 cut(s)	1707
Fsp4HI	GCNGC	9 cut(s)	93, 250, 274, 948, 1244, 1274, 1652, 1689, 1722
FspBI	CTAG	5 cut(s)	174, 678, 695, 1202, 1263
GlaI	GCGC	6 cut(s)	163, 190, 491, 748, 1242, 1631
GluI	GCNGC	9 cut(s)	93, 250, 274, 948, 1244, 1274, 1652, 1689, 1722
GsuI	CTGGAG	1 cut(s)	1337
HaeII	RGCGCY	3 cut(s)	165, 750, 1244
HaeIII	GGCC	1 cut(s)	1199
HapII	CCGG	5 cut(s)	58, 211, 296, 537, 1136
HgaI	GACGC	2 cut(s)	241, 251
HhaI	GCGC	6 cut(s)	164, 191, 492, 749, 1243, 1632
Hin1I	GRCGYC	3 cut(s)	162, 243, 252
Hin6I	GCGC	6 cut(s)	162, 189, 490, 747, 1241, 1630
HinP1I	GCGC	6 cut(s)	162, 189, 490, 747, 1241, 1630
HincII	GTYRAC	2 cut(s)	144, 241
HindII	GTYRAC	2 cut(s)	144, 241
HindIII	AAGCTT	4 cut(s)	203, 420, 1364, 1490
HpaII	CCGG	5 cut(s)	58, 211, 296, 537, 1136
HphI	GGTGA	3 cut(s)	218, 1122, 1706
Hpy166II	GTNNAC	6 cut(s)	72, 144, 184, 241, 1547, 1647
Hpy8I	GTNNAC	6 cut(s)	72, 144, 184, 241, 1547, 1647
Hpy99I	CGWCG	6 cut(s)	80, 83, 89, 103, 145, 245
HpyAV	CCTTC	3 cut(s)	442, 1327, 1535
HpyCH4III	ACNGT	5 cut(s)	99, 731, 830, 1020, 1560
HpyCH4IV	ACGT	1 cut(s)	1761
HpyF10VI	GCNNNNNNNGC	9 cut(s)	202, 258, 282, 496, 746, 821, 923, 1445, 1727
HpyF3I	CTNAG	8 cut(s)	131, 257, 351, 706, 1237, 1401, 1497, 1783
HpySE526I	ACGT	1 cut(s)	1761
Hsp92I	GRCGYC	3 cut(s)	162, 243, 252
HspAI	GCGC	6 cut(s)	162, 189, 490, 747, 1241, 1630
KasI	GGCGCC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	4 cut(s)	846, 958, 1336, 1745
LguI	GCTCTTC	1 cut(s)	1125
LmnI	GCTCC	6 cut(s)	278, 340, 367, 639, 988, 1702
Lsp1109I	GCAGC	6 cut(s)	104, 934, 1230, 1285, 1700, 1733
LweI	GCATC	9 cut(s)	126, 501, 636, 811, 1084, 1387, 1426, 1685, 1759
MaeI	CTAG	5 cut(s)	174, 678, 695, 1202, 1263
MaeII	ACGT	1 cut(s)	1761
MaeIII	GTNAC	3 cut(s)	731, 1014, 1020
MalI	GATC	4 cut(s)	848, 960, 1338, 1747
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	4 cut(s)	846, 958, 1336, 1745
MflI	RGATCY	2 cut(s)	846, 1336
MhlI	GDGCHC	3 cut(s)	108, 186, 1707
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	5 cut(s)	139, 914, 1022, 1052, 1412
MmeI	TCCRAC	2 cut(s)	580, 990
MreI	CGCCGGCG	1 cut(s)	295
MroI	TCCGGA	1 cut(s)	210
MroNI	GCCGGC	1 cut(s)	295
MroXI	GAANNNNTTC	2 cut(s)	204, 1852
MseI	TTAA	7 cut(s)	405, 726, 1077, 1191, 1256, 1328, 1709
MslI	CAYNNNNRTG	3 cut(s)	1383, 1434, 1740
MspA1I	CMGCKG	2 cut(s)	249, 1168
MspCI	CTTAAG	1 cut(s)	1327
MspI	CCGG	5 cut(s)	58, 211, 296, 537, 1136
MspR9I	CCNGG	2 cut(s)	378, 1136
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	2 cut(s)	189, 1651
MwoI	GCNNNNNNNGC	9 cut(s)	202, 258, 282, 496, 746, 821, 923, 1445, 1727
NaeI	GCCGGC	1 cut(s)	297
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	1136
NdeI	CATATG	2 cut(s)	1460, 1737
NdeII	GATC	4 cut(s)	846, 958, 1336, 1745
NgoMIV	GCCGGC	1 cut(s)	295
NlaIV	GGNNCC	5 cut(s)	107, 163, 280, 769, 1338
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	1014
NspI	RCATGY	3 cut(s)	476, 1118, 1347
NspV	TTCGAA	3 cut(s)	571, 586, 1846
PagI	TCATGA	2 cut(s)	777, 1057
PaqCI	CACCTGC	1 cut(s)	1682
PciI	ACATGT	1 cut(s)	1343
PciSI	GCTCTTC	1 cut(s)	1125
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 249
PdiI	GCCGGC	1 cut(s)	297
PdmI	GAANNNNTTC	2 cut(s)	204, 1852
PfeI	GAWTC	8 cut(s)	8, 23, 223, 517, 683, 761, 1283, 1352
PkrI	GCNGC	9 cut(s)	94, 251, 275, 949, 1245, 1275, 1653, 1690, 1723
PleI	GAGTC	5 cut(s)	139, 914, 1021, 1051, 1411
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	5 cut(s)	139, 914, 1021, 1051, 1411
PscI	ACATGT	1 cut(s)	1343
PsiI	TTATAA	1 cut(s)	1598
Psp124BI	GAGCTC	1 cut(s)	1707
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	5 cut(s)	107, 163, 280, 769, 1338
PspPI	GGNCC	2 cut(s)	28, 1198
PstI	CTGCAG	1 cut(s)	1275
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	2 cut(s)	846, 1336
PvuII	CAGCTG	1 cut(s)	1168
RsaI	GTAC	5 cut(s)	71, 467, 801, 1106, 1562
RsaNI	GTAC	5 cut(s)	70, 466, 800, 1105, 1561
RseI	CAYNNNNRTG	3 cut(s)	1383, 1434, 1740
SacI	GAGCTC	1 cut(s)	1707
SalI	GTCGAC	2 cut(s)	142, 239
SapI	GCTCTTC	1 cut(s)	1125
SaqAI	TTAA	7 cut(s)	405, 726, 1077, 1191, 1256, 1328, 1709
SatI	GCNGC	9 cut(s)	93, 250, 274, 948, 1244, 1274, 1652, 1689, 1722
Sau3AI	GATC	4 cut(s)	846, 958, 1336, 1745
Sau96I	GGNCC	2 cut(s)	28, 1198
ScaI	AGTACT	1 cut(s)	1106
SchI	GAGTC	5 cut(s)	139, 914, 1022, 1052, 1412
ScrFI	CCNGG	2 cut(s)	378, 1136
SduI	GDGCHC	3 cut(s)	108, 186, 1707
SfaNI	GCATC	9 cut(s)	126, 501, 636, 811, 1084, 1387, 1426, 1685, 1759
SfcI	CTRYAG	2 cut(s)	1271, 1633
SfoI	GGCGCC	1 cut(s)	163
SfuI	TTCGAA	3 cut(s)	571, 586, 1846
SgrAI	CRCCGGYG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	3 cut(s)	1383, 1434, 1740
SmlI	CTYRAG	3 cut(s)	485, 1001, 1327
SmoI	CTYRAG	3 cut(s)	485, 1001, 1327
SpeI	ACTAGT	1 cut(s)	694
SsiI	CCGC	8 cut(s)	179, 187, 249, 273, 276, 307, 343, 1651
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	4 cut(s)	1072, 1217, 1593, 1669
SspMI	CTAG	5 cut(s)	174, 678, 695, 1202, 1263
SstI	GAGCTC	1 cut(s)	1707
StyD4I	CCNGG	2 cut(s)	376, 1134
StyI	CCWWGG	2 cut(s)	173, 390
TaaI	ACNGT	5 cut(s)	99, 731, 830, 1020, 1560
TaiI	ACGT	1 cut(s)	1764
TatI	WGTACW	3 cut(s)	69, 465, 1104
TauI	GCSGC	3 cut(s)	252, 276, 1654
TfiI	GAWTC	8 cut(s)	8, 23, 223, 517, 683, 761, 1283, 1352
Tru1I	TTAA	7 cut(s)	405, 726, 1077, 1191, 1256, 1328, 1709
Tru9I	TTAA	7 cut(s)	405, 726, 1077, 1191, 1256, 1328, 1709
TscAI	CASTG	5 cut(s)	656, 835, 1023, 1104, 1737
TseFI	GTSAC	1 cut(s)	1014
TseI	GCWGC	6 cut(s)	92, 947, 1243, 1273, 1688, 1721
Tsp45I	GTSAC	1 cut(s)	1014
TspRI	CASTG	5 cut(s)	656, 835, 1023, 1104, 1737
Vha464I	CTTAAG	1 cut(s)	1327
VneI	GTGCAC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	7 cut(s)	879, 893, 907, 931, 1837, 1848, 1858
XceI	RCATGY	3 cut(s)	476, 1118, 1347
XmaJI	CCTAGG	1 cut(s)	173
XmiI	GTMKAC	3 cut(s)	143, 240, 1646
XmnI	GAANNNNTTC	2 cut(s)	204, 1852
XspI	CTAG	5 cut(s)	174, 678, 695, 1202, 1263
ZrmI	AGTACT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.