Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Forward (+)

9236481 .. 9237846

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGCCAAAGAAGGATAAGGTTCCACCACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCACACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

108

Amino Acids

12.07

Weight (kDa)

10.7

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	8 - 104	3.1e-41	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	4 cut(s)	151, 164, 178, 250
AluI	AGCT	4 cut(s)	151, 164, 178, 250
Alw26I	GTCTC	2 cut(s)	228, 283
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	1 cut(s)	45
AseI	ATTAAT	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	309
BccI	CCATC	2 cut(s)	196, 268
BclI	TGATCA	2 cut(s)	130, 267
BcoDI	GTCTC	2 cut(s)	228, 283
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	6, 24
BpmI	CTGGAG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	228, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bse118I	RCCGGY	1 cut(s)	43
BseGI	GGATG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	228, 283
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	2 cut(s)	228, 283
BsoBI	CYCGRG	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	130, 267, 300
BspANI	GGCC	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	6, 24
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	228, 283
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	3 cut(s)	130, 267, 300
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	33, 206
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	45, 296
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	133, 270, 303
BstMAI	GTCTC	2 cut(s)	228, 283
BstMBI	GATC	3 cut(s)	130, 267, 300
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	45, 296
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	43
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	7 cut(s)	43, 47, 151, 164, 178, 250, 294
CviKI_1	RGCY	7 cut(s)	43, 47, 151, 164, 178, 250, 294
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	132, 269, 302
DpnII	GATC	3 cut(s)	130, 267, 300
EaeI	YGGCCR	1 cut(s)	45
Eco31I	GGTCTC	2 cut(s)	228, 283
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	121
FaiI	YATR	3 cut(s)	119, 144, 209
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	2 cut(s)	130, 267
FokI	GGATG	1 cut(s)	286
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	54, 271
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	7, 100
HpyCH4III	ACNGT	2 cut(s)	33, 206
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	2 cut(s)	130, 267
Kzo9I	GATC	3 cut(s)	130, 267, 300
LmnI	GCTCC	3 cut(s)	84, 169, 247
LpnPI	CCDG	4 cut(s)	39, 57, 256, 308
MalI	GATC	3 cut(s)	132, 269, 302
MboI	GATC	3 cut(s)	130, 267, 300
MboII	GAAGA	3 cut(s)	82, 85, 88
MflI	RGATCY	1 cut(s)	300
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	50, 204, 206, 225, 228
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	1 cut(s)	216
MspI	CCGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	130, 267, 300
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	6, 24
PaeR7I	CTCGAG	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	45
PluTI	GGCGCC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	6, 24
PspXI	VCTCGAGB	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	130, 267, 300
SetI	ASST	9 cut(s)	24, 61, 111, 153, 166, 180, 252, 265, 326
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SspDI	GGCGCC	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	33, 206
TaqI	TCGA	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	216
XhoI	CTCGAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.