Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Forward (+)

18257334 .. 18258900

Gene Structure 1567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGCCGAAGAAGGATAAGGTTCCGCCACCGTCATCGAAGCCGGCGAAATCCGGAGGTGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGCTGTTTGATCAAGCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATCAATGGGTCGCTAGCAAGGAGAGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

10.7

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	10 - 105	3.1e-42	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	5 cut(s)	137, 151, 164, 178, 250
AluI	AGCT	5 cut(s)	137, 151, 164, 178, 250
AlwI	GGATC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	121, 175
AsuNHI	GCTAGC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	268
BclI	TGATCA	2 cut(s)	130, 267
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	6, 24
BmtI	GCTAGC	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bse118I	RCCGGY	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	53
BseGI	GGATG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	44, 54
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	130, 213, 267, 300
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	257
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	6, 24
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	4 cut(s)	130, 213, 267, 300
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	33, 206
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	45, 228, 296
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	133, 216, 270, 303
BstMBI	GATC	4 cut(s)	130, 213, 267, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	45, 228, 296
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	43
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	8 cut(s)	43, 137, 151, 164, 178, 250, 257, 294
CviKI_1	RGCY	8 cut(s)	43, 137, 151, 164, 178, 250, 257, 294
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	132, 215, 269, 302
DpnII	GATC	4 cut(s)	130, 213, 267, 300
EaeI	YGGCCR	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	121
FaiI	YATR	3 cut(s)	119, 144, 209
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	2 cut(s)	130, 267
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	44, 54
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	2 cut(s)	44, 54
HphI	GGTGA	2 cut(s)	121, 175
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	54, 271
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	7, 100, 198
HpyCH4III	ACNGT	2 cut(s)	33, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	2 cut(s)	130, 267
Kzo9I	GATC	4 cut(s)	130, 213, 267, 300
LmnI	GCTCC	3 cut(s)	84, 169, 247
LpnPI	CCDG	4 cut(s)	57, 67, 256, 308
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	227
MalI	GATC	4 cut(s)	132, 215, 269, 302
MboI	GATC	4 cut(s)	130, 213, 267, 300
MboII	GAAGA	4 cut(s)	22, 82, 85, 88
MflI	RGATCY	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	257
MluNI	TGGCCA	1 cut(s)	257
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	2 cut(s)	50, 204
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	2 cut(s)	44, 54
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	4 cut(s)	130, 213, 267, 300
NgoMIV	GCCGGC	1 cut(s)	43
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	6, 24
PaeR7I	CTCGAG	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	283
PluTI	GGCGCC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	6, 24
PspXI	VCTCGAGB	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	300
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	130, 213, 267, 300
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SsiI	CCGC	1 cut(s)	26
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	33, 206
TaqI	TCGA	2 cut(s)	38, 290
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	281
TspRI	CASTG	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	289
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.