Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Reverse (-)

30298235 .. 30298668

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCACCGAAGAAGGAGAAGGCACCGCCGCCGTCGTCGAAGCCGGCCAAGTCCGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGCAAAGGCAAGCAGAAGGAGAAGGTCAACAACATGGTGCTTTTCGACCAGGCTACTTACGATAAGCTGCTCTCCGAGGCTCCCAAGTTCAAGCTCATCACGCCGTCCATTCTCTCCGATCGTCTCAGGATCAACGGCTCTCTGGCCAGGCGGGCAATCAAGGACTTGATGGCTAGGGGATCCATCAGGATGGTCTCGGCTCACGCCAGCCAGCAGATTTACACCAGGGCCACCAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

108

Amino Acids

11.98

Weight (kDa)

10.7

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	7 - 105	3.7e-41	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 22
AciI	CCGC	4 cut(s)	26, 29, 57, 235
AclWI	GGATC	3 cut(s)	221, 258, 271
AcoI	YGGCCR	2 cut(s)	45, 228
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	132, 230, 308
AluBI	AGCT	2 cut(s)	151, 178
AluI	AGCT	2 cut(s)	151, 178
Alw26I	GTCTC	2 cut(s)	212, 283
AlwI	GGATC	3 cut(s)	221, 258, 271
AoxI	GGCC	3 cut(s)	45, 228, 312
ApeKI	GCWGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	2 cut(s)	4, 22
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	3 cut(s)	247, 268, 275
BceAI	ACGGC	3 cut(s)	16, 172, 235
BciT130I	CCWGG	3 cut(s)	134, 232, 310
BcoDI	GTCTC	2 cut(s)	212, 283
BfaI	CTAG	2 cut(s)	258, 325
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	29, 152
BlsI	GCNGC	2 cut(s)	30, 153
Bme1390I	CCNGG	3 cut(s)	134, 232, 310
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	4 cut(s)	6, 24, 165, 265
BmrFI	CCNGG	3 cut(s)	134, 232, 310
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	159, 309
Bse118I	RCCGGY	1 cut(s)	43
BseBI	CCWGG	3 cut(s)	134, 232, 310
BseDI	CCNNGG	2 cut(s)	159, 309
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	47, 230, 314
BshNI	GGYRCC	2 cut(s)	4, 22
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	44, 54
BsmAI	GTCTC	2 cut(s)	212, 283
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	47, 230, 314
Bso31I	GGTCTC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	202, 213, 263
BspACI	CCGC	4 cut(s)	26, 29, 57, 235
BspANI	GGCC	3 cut(s)	47, 230, 314
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	6, 24, 165, 265
BspPI	GGATC	3 cut(s)	221, 258, 271
BspT107I	GGYRCC	2 cut(s)	4, 22
BspTNI	GGTCTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	159, 309
BssMI	GATC	3 cut(s)	202, 213, 263
Bst2UI	CCWGG	3 cut(s)	134, 232, 310
BstC8I	GCNNGC	5 cut(s)	45, 95, 237, 292, 296
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	3 cut(s)	205, 216, 266
BstMAI	GTCTC	2 cut(s)	212, 283
BstMBI	GATC	3 cut(s)	202, 213, 263
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 236
BstNI	CCWGG	3 cut(s)	134, 232, 310
BstSCI	CCNGG	3 cut(s)	132, 230, 308
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	47, 230, 314
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	5 cut(s)	45, 95, 237, 292, 296
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	312
CviAII	CATG	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	204, 215, 265
DpnII	GATC	3 cut(s)	202, 213, 263
EaeI	YGGCCR	2 cut(s)	45, 228
EciI	GGCGGA	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	132, 230, 308
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	29, 152
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	29, 152
FspBI	CTAG	2 cut(s)	258, 325
GluI	GCNGC	2 cut(s)	29, 152
HaeIII	GGCC	3 cut(s)	47, 230, 314
HapII	CCGG	2 cut(s)	44, 54
Hin1II	CATG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HpaII	CCGG	2 cut(s)	44, 54
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	160, 202
Hpy188III	TCNNGA	2 cut(s)	211, 271
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	4 cut(s)	7, 13, 94, 100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 236
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	202, 213, 263
LmnI	GCTCC	2 cut(s)	84, 169
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	258, 325
MalI	GATC	3 cut(s)	204, 215, 265
MboI	GATC	3 cut(s)	202, 213, 263
MboII	GAAGA	4 cut(s)	22, 82, 85, 88
MflI	RGATCY	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	2 cut(s)	53, 154
Mox20I	TGGCCA	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	2 cut(s)	44, 54
MspR9I	CCNGG	3 cut(s)	134, 232, 310
MvaI	CCWGG	3 cut(s)	134, 232, 310
MwoI	GCNNNNNNNGC	2 cut(s)	184, 236
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	3 cut(s)	202, 213, 263
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	4 cut(s)	6, 24, 165, 265
NmeAIII	GCCGAG	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	30, 153
Ple19I	CGATCG	1 cut(s)	205
Psp6I	CCWGG	3 cut(s)	132, 230, 308
PspGI	CCWGG	3 cut(s)	132, 230, 308
PspN4I	GGNNCC	4 cut(s)	6, 24, 165, 265
PspPI	GGNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	2 cut(s)	29, 152
Sau3AI	GATC	3 cut(s)	202, 213, 263
Sau96I	GGNCC	1 cut(s)	312
ScrFI	CCNGG	3 cut(s)	134, 232, 310
SetI	ASST	4 cut(s)	111, 153, 180, 326
SmiMI	CAYNNNNRTG	1 cut(s)	272
SsiI	CCGC	4 cut(s)	26, 29, 57, 235
SspMI	CTAG	2 cut(s)	258, 325
StyD4I	CCNGG	3 cut(s)	132, 230, 308
TaqI	TCGA	2 cut(s)	38, 129
TauI	GCSGC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	151
XspI	CTAG	2 cut(s)	258, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.