Prupe.2G075600_v2.0.a1

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001219
Physical Location & Seq
Reverse (-)
11506697 .. 11507808
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G075600.1

Sequence Viewer

Length: 327 bp
ATGGCACCGAAGAAGGACAAGGCACCGCCACCGTCGTCGAAGCCGGCGAAGTCTGGAGGAGGAAAGCAGAAGAAGAAGAAGTGGAGCAAAGGAAAGCAAAAGGAGAAGGTCAACAACATGGTGCTCTTCGACCAGGGCACGTACGACAAGCTCATCGCTGAGGCACCGAAGTATAAGCTCATCACACCCTCCATTCTCTCCGACCGTCTCAGGATCAATGGGTCTCTGGCGAGGAAGGCCATAAGGGACTTGATGGCCAGAGGGGCGATTAGGATGGTTTCTGCTCATGCCAGCCAGCAGATCTACACCAGGGCCACCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S25

Protein Analysis

109

Amino Acids

11.94

Weight (kDa)

10.59

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 22, 163
AciI CCGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 255
AfaI GTAC 1 cut(s) 143
AjnI CCWGG 2 cut(s) 132, 308
AluBI AGCT 2 cut(s) 151, 178
AluI AGCT 2 cut(s) 151, 178
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 212, 228
AlwI GGATC 1 cut(s) 221
AoxI GGCC 3 cut(s) 237, 255, 312
AspS9I GGNCC 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 3 cut(s) 4, 22, 163
Bbv12I GWGCWC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 247, 268
BciT130I CCWGG 2 cut(s) 134, 310
BcoDI GTCTC 2 cut(s) 212, 228
BfaI CTAG 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 300
Bme1390I CCNGG 2 cut(s) 134, 310
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 3 cut(s) 6, 24, 165
BmrFI CCNGG 2 cut(s) 134, 310
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 133, 309
Bse118I RCCGGY 1 cut(s) 43
BseBI CCWGG 2 cut(s) 134, 310
BseDI CCNNGG 2 cut(s) 133, 309
BseGI GGATG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 150, 223
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 239, 257, 314
BshNI GGYRCC 3 cut(s) 4, 22, 163
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 44
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 212, 228
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 3 cut(s) 239, 257, 314
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 126, 140
Bsp143I GATC 2 cut(s) 213, 300
BspACI CCGC 1 cut(s) 26
BspANI GGCC 3 cut(s) 239, 257, 314
BspCNI CTCAG 2 cut(s) 151, 222
BspLI GGNNCC 3 cut(s) 6, 24, 165
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 3 cut(s) 4, 22, 163
BspTNI GGTCTC 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 133, 309
BssMI GATC 2 cut(s) 213, 300
Bst2UI CCWGG 2 cut(s) 134, 310
Bst4CI ACNGT 2 cut(s) 33, 206
Bst6I CTCTTC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 45, 292, 296
BstDEI CTNAG 2 cut(s) 159, 209
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 2 cut(s) 216, 303
BstMAI GTCTC 2 cut(s) 212, 228
BstMBI GATC 2 cut(s) 213, 300
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 236, 263
BstNI CCWGG 2 cut(s) 134, 310
BstSCI CCNGG 2 cut(s) 132, 308
BstSLI GKGCMC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 3 cut(s) 239, 257, 314
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 3 cut(s) 45, 292, 296
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 118, 287
CviJI RGCY 7 cut(s) 43, 151, 178, 239, 257, 294, 314
CviKI_1 RGCY 7 cut(s) 43, 151, 178, 239, 257, 294, 314
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 159, 209
DpnI GATC 2 cut(s) 215, 302
DpnII GATC 2 cut(s) 213, 300
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 132, 308
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 2 cut(s) 121, 290
FaiI YATR 4 cut(s) 119, 174, 242, 288
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 117, 286
FokI GGATG 1 cut(s) 286
FspBI CTAG 1 cut(s) 325
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 3 cut(s) 239, 257, 314
HapII CCGG 1 cut(s) 44
Hin1II CATG 2 cut(s) 121, 290
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 54, 211
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 2 cut(s) 37, 40
HpyAV CCTTC 3 cut(s) 7, 100, 229
HpyCH4III ACNGT 2 cut(s) 33, 206
HpyCH4IV ACGT 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 263
HpyF3I CTNAG 2 cut(s) 159, 209
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 2 cut(s) 121, 290
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 213, 300
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 84
MaeI CTAG 1 cut(s) 325
MaeII ACGT 1 cut(s) 140
MalI GATC 2 cut(s) 215, 302
MboI GATC 2 cut(s) 213, 300
MboII GAAGA 5 cut(s) 22, 82, 85, 88, 118
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 126, 140
MlsI TGGCCA 1 cut(s) 257
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 50, 53, 154, 199, 225, 254
Mox20I TGGCCA 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 43
MscI TGGCCA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 134, 310
MvaI CCWGG 2 cut(s) 134, 310
MwoI GCNNNNNNNGC 2 cut(s) 236, 263
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 2 cut(s) 213, 300
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 2 cut(s) 121, 290
NlaIV GGNNCC 3 cut(s) 6, 24, 165
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 45
Pfl23II CGTACG 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 132, 308
PspGI CCWGG 2 cut(s) 132, 308
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 6, 24, 165
PspPI GGNCC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 300
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 131
Sau3AI GATC 2 cut(s) 213, 300
Sau96I GGNCC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 134, 310
SduI GDGCHC 2 cut(s) 126, 140
SetI ASST 5 cut(s) 111, 143, 153, 180, 326
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 132, 308
TaaI ACNGT 2 cut(s) 33, 206
TaiI ACGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 38, 129
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.