FvH4_3g25090

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001219
Physical Location & Seq
Reverse (-)
18130908 .. 18133232
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25090.t1

Sequence Viewer

Length: 327 bp
ATGGCACCCAAGAAGGAGAAGGCTCCCCCACCGTCCTCGAAGCCGGCGAAATCTGGCGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTCGACCAGGGGACTTATGACAAGCTCCTCTCAGAAGCTCCCAAGTTCAAGCTCATCACTCCTTCTATCTTGTCAGACAGGCTGAGGATTAATGGATCATTGGCACGCCGTGCTATTAAGGATTTGATGGCAAGGGGTTCTATTAGGATGATTTCTGCCCATGCTAGTCAGCAGATTTACACCAGAGCCACCAACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S25

Protein Analysis

109

Amino Acids

11.98

Weight (kDa)

10.7

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S25 PF03297 7 - 105 2.5e-40 S25 ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 229
AdeI CACNNNGTG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 3 cut(s) 151, 164, 178
AluI AGCT 3 cut(s) 151, 164, 178
AlwI GGATC 1 cut(s) 229
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 4
BbvCI CCTCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 247
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 134
BfaI CTAG 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 6, 24
BmrFI CCNGG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 43
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 171, 200
BseRI GAGGAG 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 170, 201
BspLI GGNNCC 2 cut(s) 6, 24
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 4 cut(s) 45, 65, 95, 232
BstDEI CTNAG 2 cut(s) 157, 209
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 4 cut(s) 45, 65, 95, 232
Cfr10I RCCGGY 1 cut(s) 43
CviAII CATG 2 cut(s) 118, 287
CviJI RGCY 7 cut(s) 23, 43, 151, 164, 178, 208, 314
CviKI_1 RGCY 7 cut(s) 23, 43, 151, 164, 178, 208, 314
DdeI CTNAG 2 cut(s) 157, 209
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
DraIII CACNNNGTG 1 cut(s) 236
EciI GGCGGA 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 121, 290
FaiI YATR 3 cut(s) 119, 144, 288
FaqI GGGAC 1 cut(s) 151
FatI CATG 2 cut(s) 117, 286
FokI GGATG 1 cut(s) 286
FspBI CTAG 1 cut(s) 291
HapII CCGG 1 cut(s) 44
Hin1II CATG 2 cut(s) 121, 290
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 160, 202
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 4 cut(s) 7, 13, 100, 198
HpyCH4III ACNGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 157, 209
Hsp92II CATG 2 cut(s) 121, 290
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 4 cut(s) 28, 84, 156, 169
LpnPI CCDG 6 cut(s) 39, 57, 119, 146, 190, 322
MaeI CTAG 1 cut(s) 291
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 3 cut(s) 82, 85, 88
MnlI CCTC 4 cut(s) 46, 53, 164, 204
MroNI GCCGGC 1 cut(s) 43
MseI TTAA 2 cut(s) 216, 243
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 236
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 1 cut(s) 221
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 2 cut(s) 121, 290
NlaIV GGNNCC 2 cut(s) 6, 24
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 45
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 6, 24
SaqAI TTAA 2 cut(s) 216, 243
Sau3AI GATC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 134
SetI ASST 5 cut(s) 111, 153, 166, 180, 326
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 38, 129
Tru1I TTAA 2 cut(s) 216, 243
Tru9I TTAA 2 cut(s) 216, 243
VspI ATTAAT 1 cut(s) 216
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.