Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Reverse (-)

638277 .. 639710

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G005700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCACCGAAGAAGGATAAGGCACCGCCGCCGTCTTCGAAGCCGGCGAAGTCAGGAGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAAGGAAAGCAAAAGGAGAAGGTCAACAACATGGTGCTCTTCGACCAGGGCACGTACGACAAGCTCATCGCTGAGGCCCCCAAGTATAAGCTCATCACACCCTCCATTCTCTCCGACCGTCTCAGGATCAATGGATCGCTGGCGAGGAAGGCCATAAGGGACTTGATGGCCAGAGGGGCGATTAGGATGGTTTCTGCTCATGCCAGCCAGCAGATTTACACCAGGGCCACCAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

109

Amino Acids

11.94

Weight (kDa)

10.59

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 22
AciI	CCGC	2 cut(s)	26, 29
AclWI	GGATC	2 cut(s)	221, 229
AcoI	YGGCCR	1 cut(s)	255
AfaI	GTAC	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	132, 308
AluBI	AGCT	2 cut(s)	151, 178
AluI	AGCT	2 cut(s)	151, 178
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	221, 229
AoxI	GGCC	4 cut(s)	162, 237, 255, 312
AspS9I	GGNCC	2 cut(s)	163, 312
AsuII	TTCGAA	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	4, 22
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	247, 268
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	134, 310
BcoDI	GTCTC	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	134, 310
BmgT120I	GGNCC	2 cut(s)	163, 312
BmiI	GGNNCC	3 cut(s)	6, 24, 165
BmrFI	CCNGG	2 cut(s)	134, 310
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	133, 309
Bse118I	RCCGGY	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	134, 310
BseDI	CCNNGG	2 cut(s)	133, 309
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	150, 223
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	4 cut(s)	164, 239, 257, 314
BshNI	GGYRCC	2 cut(s)	4, 22
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	44
BsiWI	CGTACG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	4 cut(s)	164, 239, 257, 314
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	126, 140
Bsp143I	GATC	2 cut(s)	213, 221
BspACI	CCGC	2 cut(s)	26, 29
BspANI	GGCC	4 cut(s)	164, 239, 257, 314
BspCNI	CTCAG	2 cut(s)	151, 222
BspLI	GGNNCC	3 cut(s)	6, 24, 165
BspPI	GGATC	2 cut(s)	221, 229
BspQI	GCTCTTC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	38
BspT107I	GGYRCC	2 cut(s)	4, 22
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	133, 309
BssMI	GATC	2 cut(s)	213, 221
Bst2UI	CCWGG	2 cut(s)	134, 310
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	5 cut(s)	45, 65, 228, 292, 296
BstDEI	CTNAG	3 cut(s)	159, 209, 324
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	2 cut(s)	216, 224
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	213, 221
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 263
BstNI	CCWGG	2 cut(s)	134, 310
BstSCI	CCNGG	2 cut(s)	132, 308
BstSLI	GKGCMC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	164, 239, 257, 314
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	5 cut(s)	45, 65, 228, 292, 296
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	163, 312
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	118, 287
CviJI	RGCY	8 cut(s)	43, 151, 164, 178, 239, 257, 294, 314
CviKI_1	RGCY	8 cut(s)	43, 151, 164, 178, 239, 257, 294, 314
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	159, 209, 324
DpnI	GATC	2 cut(s)	215, 223
DpnII	GATC	2 cut(s)	213, 221
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	132, 308
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	2 cut(s)	121, 290
FaiI	YATR	4 cut(s)	119, 174, 242, 288
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	117, 286
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	164, 239, 257, 314
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	121, 290
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	54, 211
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	7, 100, 229
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 263
HpyF3I	CTNAG	3 cut(s)	159, 209, 324
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	121, 290
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	213, 221
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	140
MalI	GATC	2 cut(s)	215, 223
MboI	GATC	2 cut(s)	213, 221
MboII	GAAGA	6 cut(s)	22, 27, 82, 85, 88, 118
MhlI	GDGCHC	2 cut(s)	126, 140
MlsI	TGGCCA	1 cut(s)	257
MluNI	TGGCCA	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	50, 53, 154, 199, 225, 254
Mox20I	TGGCCA	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	134, 310
MvaI	CCWGG	2 cut(s)	134, 310
MwoI	GCNNNNNNNGC	2 cut(s)	236, 263
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	2 cut(s)	213, 221
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	121, 290
NlaIV	GGNNCC	3 cut(s)	6, 24, 165
NspV	TTCGAA	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	45
Pfl23II	CGTACG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	132, 308
PspGI	CCWGG	2 cut(s)	132, 308
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	6, 24, 165
PspPI	GGNCC	2 cut(s)	163, 312
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	213, 221
Sau96I	GGNCC	2 cut(s)	163, 312
ScrFI	CCNGG	2 cut(s)	134, 310
SduI	GDGCHC	2 cut(s)	126, 140
SetI	ASST	4 cut(s)	111, 143, 153, 180
SfuI	TTCGAA	1 cut(s)	38
SsiI	CCGC	2 cut(s)	26, 29
StyD4I	CCNGG	2 cut(s)	132, 308
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	38, 129
TauI	GCSGC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.