Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Reverse (-)

34589718 .. 34590513

Gene Structure 796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1289800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGCCGAAGAAGGACAAGGCACCGCCGCCGTCGTCGAAGCCGGCGAAGTCCGGCGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTGCTCTTCGACCAGGGAACCTACGACAAGCTCCTCACCGAGGCACCCAAGTACAAGCTCATCACACCGTCCATTCTCTCCGACCGTCTCAGGATCAACGGCTCGCTGGCAAGGAGGGCCATCAGGGAGTTGATGGCCAGAGGCTTGATCAGGATGGTCTCTGCTCACGCCAGCCAGCAGATCTACACCAGGGCTACCAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

109

Amino Acids

12.05

Weight (kDa)

10.69

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	7 - 105	4.2e-42	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	4, 22, 163
AciI	CCGC	3 cut(s)	26, 29, 57
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	132, 308
AluBI	AGCT	2 cut(s)	151, 178
AluI	AGCT	2 cut(s)	151, 178
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	212, 283
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	2 cut(s)	237, 255
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	121, 148
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	3 cut(s)	4, 22, 163
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	3 cut(s)	247, 248, 268
BceAI	ACGGC	2 cut(s)	16, 235
BciT130I	CCWGG	2 cut(s)	134, 310
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	212, 283
BfaI	CTAG	1 cut(s)	325
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	134, 310
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	4 cut(s)	6, 24, 139, 165
BmrFI	CCNGG	2 cut(s)	134, 310
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	133, 159, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	134, 310
BseDI	CCNNGG	3 cut(s)	133, 159, 309
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	239, 257
BshNI	GGYRCC	3 cut(s)	4, 22, 163
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	44, 54
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	212, 283
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	239, 257
Bso31I	GGTCTC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	213, 267, 300
BspACI	CCGC	3 cut(s)	26, 29, 57
BspANI	GGCC	2 cut(s)	239, 257
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	6, 24, 139, 165
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	3 cut(s)	4, 22, 163
BspTNI	GGTCTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	133, 159, 309
BssMI	GATC	3 cut(s)	213, 267, 300
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	134, 310
Bst4CI	ACNGT	2 cut(s)	189, 206
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	6 cut(s)	45, 65, 224, 228, 292, 296
BstDEI	CTNAG	1 cut(s)	209
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	216, 270, 303
BstMAI	GTCTC	2 cut(s)	212, 283
BstMBI	GATC	3 cut(s)	213, 267, 300
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	134, 310
BstSCI	CCNGG	2 cut(s)	132, 308
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	239, 257
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	6 cut(s)	45, 65, 224, 228, 292, 296
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	9 cut(s)	43, 151, 178, 222, 239, 257, 264, 294, 314
CviKI_1	RGCY	9 cut(s)	43, 151, 178, 222, 239, 257, 264, 294, 314
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	209
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	215, 269, 302
DpnII	GATC	3 cut(s)	213, 267, 300
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	132, 308
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	325
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	239, 257
HapII	CCGG	2 cut(s)	44, 54
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	44, 54
HphI	GGTGA	2 cut(s)	121, 148
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	211, 271
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	3 cut(s)	7, 94, 100
HpyCH4III	ACNGT	2 cut(s)	189, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	213, 267, 300
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	84, 156
MaeI	CTAG	1 cut(s)	325
MalI	GATC	3 cut(s)	215, 269, 302
MboI	GATC	3 cut(s)	213, 267, 300
MboII	GAAGA	5 cut(s)	22, 82, 85, 88, 118
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	257
MluNI	TGGCCA	1 cut(s)	257
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	53, 154, 164, 228, 254
Mox20I	TGGCCA	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	2 cut(s)	44, 54
MspR9I	CCNGG	2 cut(s)	134, 310
MvaI	CCWGG	2 cut(s)	134, 310
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	213, 267, 300
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	4 cut(s)	6, 24, 139, 165
PciSI	GCTCTTC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	30
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	132, 308
PspGI	CCWGG	2 cut(s)	132, 308
PspN4I	GGNNCC	4 cut(s)	6, 24, 139, 165
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	3 cut(s)	213, 267, 300
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	134, 310
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	111, 143, 153, 180, 326
SfoI	GGCGCC	1 cut(s)	6
SsiI	CCGC	3 cut(s)	26, 29, 57
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	132, 308
TaaI	ACNGT	2 cut(s)	189, 206
TaqI	TCGA	2 cut(s)	38, 129
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	158
XspI	CTAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.