Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Reverse (-)

16504230 .. 16505483

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34555.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCACCCAAGAAAGACAAAGTTCCTCCTCCGTCCTCTAAACCCGCCAAATCCGGTGGCGGCAAGCAAAAGAAAAAGAAGTGGAGCAAAGGAAAGCAAAAGGAGAAAGTGAACAACATGGTTTTGTTTGACCAAGCAACTTACGACAAGCTTCTCTCTGAGGCTCCCAAGTTCAAACTTATCACTCCTTCTATCCTCTCTGACCGTTTGAGGATCAATGGATCGCTTGCTAGAAGGGCGATCAGAGAATTGATGGCTAAGGGAACAATCAGGATGGTCTCTGCTCACTCAAGCCAGCAGATCTACACTAGGGCAACCCACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

108

Amino Acids

12.02

Weight (kDa)

10.7

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	10 - 105	1.5e-42	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	45, 60
AclWI	GGATC	2 cut(s)	221, 229
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	221, 229
BanI	GGYRCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	247, 268
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	231, 309
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	6, 165
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	213, 221, 240, 300
BspACI	CCGC	2 cut(s)	45, 60
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	6, 165
BspPI	GGATC	2 cut(s)	221, 229
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	4 cut(s)	213, 221, 240, 300
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	65, 228, 296
BstDEI	CTNAG	2 cut(s)	159, 258
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	4 cut(s)	216, 224, 243, 303
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	4 cut(s)	213, 221, 240, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	3 cut(s)	65, 228, 296
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	5 cut(s)	151, 164, 257, 294, 324
CviKI_1	RGCY	5 cut(s)	151, 164, 257, 294, 324
DdeI	CTNAG	2 cut(s)	159, 258
DpnI	GATC	4 cut(s)	215, 223, 242, 302
DpnII	GATC	4 cut(s)	213, 221, 240, 300
Eco31I	GGTCTC	1 cut(s)	283
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	2 cut(s)	231, 309
GluI	GCNGC	1 cut(s)	61
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	160, 202, 245
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	198, 228
HpyCH4III	ACNGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	159, 258
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	213, 221, 240, 300
LmnI	GCTCC	2 cut(s)	84, 169
LpnPI	CCDG	3 cut(s)	67, 256, 308
MaeI	CTAG	2 cut(s)	231, 309
MalI	GATC	4 cut(s)	215, 223, 242, 302
MboI	GATC	4 cut(s)	213, 221, 240, 300
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	1 cut(s)	248
MnlI	CCTC	6 cut(s)	36, 39, 46, 154, 204, 206
MspI	CCGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	4 cut(s)	213, 221, 240, 300
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	6, 165
PkrI	GCNGC	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	6, 165
PsuI	RGATCY	1 cut(s)	300
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	4 cut(s)	213, 221, 240, 300
SetI	ASST	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	2 cut(s)	45, 60
SspMI	CTAG	2 cut(s)	231, 309
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	1 cut(s)	248
TauI	GCSGC	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	21
XspI	CTAG	2 cut(s)	231, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.