Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Reverse (-)

49422577 .. 49422976

Gene Structure 400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014211

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTCCGAAGAAGGAAAAGGCACCGCCGCCGTCGTCGAAGCCGGCCAAGTCCGGCGGAGGGAAGCAGAAGAAGAAGAAATGGAGCAAAGGAAAGCAGAAGGAGAAGGTCAACAACATGGTGCTGTTCGACCAGGCCACCTACGATAAGCTGCTGTCTGAGGCCCCCAAGTTCAAGCTGATCACACCGTCCATTCTCTCCGATCGTCTCAGGATCAACGGCTCTCTGGCCAGGAAGGCAATCAAGGACTTGATGGCTAGGGGATCCATCAGGATGGTCTCTGCTCACGCCAGCCAGCAGATCTACACTAGGGCAACCAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

109

Amino Acids

11.95

Weight (kDa)

10.6

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	7 - 105	5.9e-41	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	3 cut(s)	26, 29, 57
AclWI	GGATC	3 cut(s)	221, 258, 271
AcoI	YGGCCR	2 cut(s)	45, 228
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	132, 230
AluBI	AGCT	2 cut(s)	151, 178
AluI	AGCT	2 cut(s)	151, 178
Alw26I	GTCTC	2 cut(s)	212, 283
AlwI	GGATC	3 cut(s)	221, 258, 271
AoxI	GGCC	4 cut(s)	45, 135, 162, 228
ApeKI	GCWGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	3 cut(s)	247, 268, 275
BceAI	ACGGC	2 cut(s)	16, 235
BciT130I	CCWGG	2 cut(s)	134, 232
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	212, 283
BfaI	CTAG	3 cut(s)	258, 309, 325
BglI	GCCNNNNNGGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	2 cut(s)	29, 152
BlsI	GCNGC	2 cut(s)	30, 153
Bme1390I	CCNGG	2 cut(s)	134, 232
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	4 cut(s)	6, 24, 165, 265
BmrFI	CCNGG	2 cut(s)	134, 232
BsaI	GGTCTC	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	134, 232
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	150, 223
BseXI	GCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	4 cut(s)	47, 137, 164, 230
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	44, 54
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	212, 283
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	47, 137, 164, 230
Bso31I	GGTCTC	1 cut(s)	283
Bsp143I	GATC	5 cut(s)	180, 202, 213, 263, 300
BspACI	CCGC	3 cut(s)	26, 29, 57
BspANI	GGCC	4 cut(s)	47, 137, 164, 230
BspCNI	CTCAG	2 cut(s)	151, 222
BspLI	GGNNCC	4 cut(s)	6, 24, 165, 265
BspPI	GGATC	3 cut(s)	221, 258, 271
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	5 cut(s)	180, 202, 213, 263, 300
Bst2UI	CCWGG	2 cut(s)	134, 232
Bst4CI	ACNGT	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	45, 292, 296
BstDEI	CTNAG	2 cut(s)	159, 209
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	5 cut(s)	183, 205, 216, 266, 303
BstMAI	GTCTC	2 cut(s)	212, 283
BstMBI	GATC	5 cut(s)	180, 202, 213, 263, 300
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	134, 232
BstSCI	CCNGG	2 cut(s)	132, 230
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	263, 300
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	2 cut(s)	263, 300
BsuRI	GGCC	4 cut(s)	47, 137, 164, 230
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	3 cut(s)	45, 292, 296
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	159, 209
DpnI	GATC	5 cut(s)	182, 204, 215, 265, 302
DpnII	GATC	5 cut(s)	180, 202, 213, 263, 300
EaeI	YGGCCR	2 cut(s)	45, 228
EciI	GGCGGA	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	132, 230
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	29, 152
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	29, 152
FspBI	CTAG	3 cut(s)	258, 309, 325
GluI	GCNGC	2 cut(s)	29, 152
HaeIII	GGCC	4 cut(s)	47, 137, 164, 230
HapII	CCGG	2 cut(s)	44, 54
Hin1II	CATG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HpaII	CCGG	2 cut(s)	44, 54
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	9, 160, 202
Hpy188III	TCNNGA	2 cut(s)	211, 271
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	4 cut(s)	7, 94, 100, 229
HpyCH4III	ACNGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	159, 209
Hsp92II	CATG	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	180, 202, 213, 263, 300
LmnI	GCTCC	2 cut(s)	10, 84
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	3 cut(s)	258, 309, 325
MalI	GATC	5 cut(s)	182, 204, 215, 265, 302
MboI	GATC	5 cut(s)	180, 202, 213, 263, 300
MboII	GAAGA	4 cut(s)	22, 82, 85, 88
MflI	RGATCY	2 cut(s)	263, 300
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	2 cut(s)	53, 154
Mox20I	TGGCCA	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	2 cut(s)	44, 54
MspR9I	CCNGG	2 cut(s)	134, 232
MvaI	CCWGG	2 cut(s)	134, 232
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	5 cut(s)	180, 202, 213, 263, 300
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	4 cut(s)	6, 24, 165, 265
PdiI	GCCGGC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	30, 153
Ple19I	CGATCG	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	132, 230
PspGI	CCWGG	2 cut(s)	132, 230
PspN4I	GGNNCC	4 cut(s)	6, 24, 165, 265
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	263, 300
PvuI	CGATCG	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	2 cut(s)	29, 152
Sau3AI	GATC	5 cut(s)	180, 202, 213, 263, 300
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	134, 232
SetI	ASST	5 cut(s)	111, 143, 153, 180, 326
SmiMI	CAYNNNNRTG	1 cut(s)	272
SsiI	CCGC	3 cut(s)	26, 29, 57
SspMI	CTAG	3 cut(s)	258, 309, 325
StyD4I	CCNGG	2 cut(s)	132, 230
TaaI	ACNGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	38, 129
TauI	GCSGC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	151
XspI	CTAG	3 cut(s)	258, 309, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.