Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001219

Physical Location & Seq

Genomic Coordinates Forward (+)

2101364 .. 2101775

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGCCGAAGAAGGACAAGGCACCGCCGCCGTCGTCGAAGCCGGCGAAATCCGGAGGAGGCAAACAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTGCTCTTCGACCAGGGCACCTACGACAAGCTCCTCACTGAGGCACCCAAGTACAAGCTCATCACACCGTCCATTCTCTCCGACCGTCTCAGGATCAACGGTTCCCTGGCCAGGAAGGCCATCAGGGAGTTGATGGCTAGAGGCTCGATCAGGATGGTCTCTGCCCATGCCAGCCAGCAGATCTACACCAGGGCTACCAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S25

Protein Analysis

109

Amino Acids

12.0

Weight (kDa)

10.59

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	7 - 105	2.4e-41	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16360 AT2G21580 AT2G21580 AT4G34555 AT4G39200 AT4G39200
fragaria_vesca	FvH4_1g21830 FvH4_2g09230 FvH4_3g21050 FvH4_3g25090 FvH4_7g07520 FvH4_7g07520
malus_domestica	MD02G1289800.v1.1 MD03G1147300.v1.1 MD07G1037200.v1.1 MD11G1166000.v1.1
prunus_persica	Prupe.2G075600_v2.0.a1 Prupe.7G005700_v2.0.a1
pyrus_communis	pycom07g02600 pycom11g13780
rosa_chinensis	RchiOBHm_Chr1g0339301 RchiOBHm_Chr3g0463111 RchiOBHm_Chr5g0045631 RchiOBHm_Chr6g0265071
rosa_laevigata	RLG00000014211 RLG00000029224 RLG00000034365
rosa_multiflora	Rmu_sc0001248.1_g000014 Rmu_sc0028778.1_g000001 Rmu_ssc0000359.1_g000073 Rmu_ssc0000398.1_g000015
rosa_roxburghii	Rroxscaffold_1G00035590 Rroxscaffold_4G00313420 Rroxscaffold_7G00202980
rosa_rugosa	Rorug01G0142800.1 Rorug05G0223700 Rorug05G0223800 Rorug06G0013300
rosa_samantha	Rh1AG159800 Rh1BG126800 Rh1CG149000 Rh3AG119700 Rh3CG126100 Rh5AG304600 Rh5BG313300 Rh5CG339600 Rh5DG323800 Rh6AG136700 Rh6BG133500 Rh6CG131900 Rh6DG119200
rosa_wichuraiana	Rw0G020610 Rw0G021060 Rw1G013510 Rw5G028310 Rw6G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	4, 22, 137, 163
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	2 cut(s)	26, 29
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	160, 231
AjnI	CCWGG	4 cut(s)	132, 225, 230, 308
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	2 cut(s)	151, 178
AluI	AGCT	2 cut(s)	151, 178
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	212, 283
AlwI	GGATC	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	2 cut(s)	228, 237
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	4 cut(s)	4, 22, 137, 163
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	3 cut(s)	247, 248, 268
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	4 cut(s)	134, 227, 232, 310
BcoDI	GTCTC	2 cut(s)	212, 283
BfaI	CTAG	2 cut(s)	258, 325
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	4 cut(s)	134, 227, 232, 310
BmiI	GGNNCC	5 cut(s)	6, 24, 139, 165, 223
BmrFI	CCNGG	4 cut(s)	134, 227, 232, 310
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	133, 225, 309
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 231
Bse118I	RCCGGY	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	4 cut(s)	134, 227, 232, 310
BseDI	CCNNGG	3 cut(s)	133, 225, 309
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	160, 231
BseMII	CTCAG	2 cut(s)	150, 223
BseRI	GAGGAG	2 cut(s)	72, 143
BseSI	GKGCMC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	230, 239
BshNI	GGYRCC	4 cut(s)	4, 22, 137, 163
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	44, 54
BslI	CCNNNNNNNGG	2 cut(s)	160, 231
BsmAI	GTCTC	2 cut(s)	212, 283
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	230, 239
Bso31I	GGTCTC	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	126, 140
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	213, 267, 300
BspACI	CCGC	2 cut(s)	26, 29
BspANI	GGCC	2 cut(s)	230, 239
BspCNI	CTCAG	2 cut(s)	151, 222
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	5 cut(s)	6, 24, 139, 165, 223
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	4 cut(s)	4, 22, 137, 163
BspTNI	GGTCTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	133, 225, 309
BssMI	GATC	3 cut(s)	213, 267, 300
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	4 cut(s)	134, 227, 232, 310
Bst4CI	ACNGT	3 cut(s)	189, 206, 221
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	45, 292, 296
BstDEI	CTNAG	2 cut(s)	159, 209
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	216, 270, 303
BstMAI	GTCTC	2 cut(s)	212, 283
BstMBI	GATC	3 cut(s)	213, 267, 300
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	4 cut(s)	134, 227, 232, 310
BstSCI	CCNGG	4 cut(s)	132, 225, 230, 308
BstSLI	GKGCMC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	230, 239
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	45, 292, 296
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	2 cut(s)	118, 287
CviJI	RGCY	9 cut(s)	43, 151, 178, 230, 239, 257, 264, 294, 314
CviKI_1	RGCY	9 cut(s)	43, 151, 178, 230, 239, 257, 264, 294, 314
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	159, 209
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	215, 269, 302
DpnII	GATC	3 cut(s)	213, 267, 300
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	4 cut(s)	132, 225, 230, 308
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	2 cut(s)	121, 290
FaiI	YATR	2 cut(s)	119, 288
FatI	CATG	2 cut(s)	117, 286
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	258, 325
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	230, 239
HapII	CCGG	2 cut(s)	44, 54
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	121, 290
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	44, 54
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	3 cut(s)	54, 211, 271
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	4 cut(s)	7, 94, 100, 229
HpyCH4III	ACNGT	3 cut(s)	189, 206, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	159, 209
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	121, 290
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	213, 267, 300
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	84, 156
MaeI	CTAG	2 cut(s)	258, 325
MalI	GATC	3 cut(s)	215, 269, 302
MboI	GATC	3 cut(s)	213, 267, 300
MboII	GAAGA	5 cut(s)	22, 82, 85, 88, 118
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	126, 140
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	50, 53, 154, 164, 254
Mox20I	TGGCCA	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	2 cut(s)	44, 54
MspR9I	CCNGG	4 cut(s)	134, 227, 232, 310
MvaI	CCWGG	4 cut(s)	134, 227, 232, 310
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	213, 267, 300
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	121, 290
NlaIV	GGNNCC	5 cut(s)	6, 24, 139, 165, 223
PciSI	GCTCTTC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	30
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	4 cut(s)	132, 225, 230, 308
PspGI	CCWGG	4 cut(s)	132, 225, 230, 308
PspN4I	GGNNCC	5 cut(s)	6, 24, 139, 165, 223
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	3 cut(s)	213, 267, 300
ScrFI	CCNGG	4 cut(s)	134, 227, 232, 310
SduI	GDGCHC	2 cut(s)	126, 140
SetI	ASST	5 cut(s)	111, 143, 153, 180, 326
SfiI	GGCCNNNNNGGCC	1 cut(s)	236
SfoI	GGCGCC	1 cut(s)	6
SsiI	CCGC	2 cut(s)	26, 29
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	258, 325
StyD4I	CCNGG	4 cut(s)	132, 225, 230, 308
TaaI	ACNGT	3 cut(s)	189, 206, 221
TaqI	TCGA	3 cut(s)	38, 129, 266
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	158
XspI	CTAG	2 cut(s)	258, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.