pycom11g13780

40S ribosomal protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
13560049 .. 13562187
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13780.4

Sequence Viewer

Length: 327 bp
ATGGCTCCCAAGAAGGATAAGGCTCCTCCACCGTCCTCAAAGCCTGCCAAGTCTGGCGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGGACTTACGACAAGCTGCTTTCCGAAGTTCCGAAGTACAAGCTCATTACTCCTTCCATCTTGTCTGACAGACTAAGGATTAATGGATCATTGGCTCGCCGTGCAATTAAGGATTTGATGGCAAGGGGTTCCATTAGGCTGATAGCTGCTCATGCTAGCCAGCAGATATACACCAGAGCCACCAATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

11.98

Weight (kDa)

10.59

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 229
AfaI GTAC 1 cut(s) 173
AluBI AGCT 3 cut(s) 151, 178, 281
AluI AGCT 3 cut(s) 151, 178, 281
AlwI GGATC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 151, 281
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 121
AsuNHI GCTAGC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 138, 268
BccI CCATC 2 cut(s) 200, 247
BceAI ACGGC 1 cut(s) 219
BclI TGATCA 1 cut(s) 130
BfaI CTAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 152, 282
BlsI GCNGC 2 cut(s) 153, 283
BmiI GGNNCC 3 cut(s) 6, 24, 265
BmtI GCTAGC 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 138, 268
BslFI GGGAC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 130, 221
BspACI CCGC 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 6, 24, 265
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 229
BssMI GATC 2 cut(s) 130, 221
Bst4CI ACNGT 1 cut(s) 33
BstC8I GCNNGC 5 cut(s) 45, 65, 232, 292, 296
BstDEI CTNAG 1 cut(s) 209
BstKTI GATC 2 cut(s) 133, 224
BstMBI GATC 2 cut(s) 130, 221
BstMWI GCNNNNNNNGC 2 cut(s) 236, 287
BstV1I GCAGC 2 cut(s) 138, 268
Cac8I GCNNGC 5 cut(s) 45, 65, 232, 292, 296
Csp6I GTAC 1 cut(s) 172
CviAII CATG 2 cut(s) 118, 287
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 132, 223
DpnII GATC 2 cut(s) 130, 221
EciI GGCGGA 1 cut(s) 72
FaeI CATG 2 cut(s) 121, 290
FaiI YATR 3 cut(s) 119, 288, 304
FaqI GGGAC 1 cut(s) 151
FatI CATG 2 cut(s) 117, 286
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 152, 282
Fsp4HI GCNGC 2 cut(s) 152, 282
FspBI CTAG 1 cut(s) 291
GluI GCNGC 2 cut(s) 152, 282
Hin1II CATG 2 cut(s) 121, 290
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 160, 168, 202
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 7, 100, 198
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 287
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 2 cut(s) 121, 290
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 130, 221
LmnI GCTCC 3 cut(s) 10, 28, 84
LpnPI CCDG 5 cut(s) 39, 57, 119, 308, 322
Lsp1109I GCAGC 2 cut(s) 138, 268
MaeI CTAG 1 cut(s) 291
MalI GATC 2 cut(s) 132, 223
MboI GATC 2 cut(s) 130, 221
MboII GAAGA 3 cut(s) 82, 85, 88
MluCI AATT 1 cut(s) 240
MnlI CCTC 3 cut(s) 36, 46, 53
MseI TTAA 3 cut(s) 216, 243, 325
MwoI GCNNNNNNNGC 2 cut(s) 236, 287
NdeII GATC 2 cut(s) 130, 221
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 2 cut(s) 121, 290
NlaIV GGNNCC 3 cut(s) 6, 24, 265
PkrI GCNGC 2 cut(s) 153, 283
PshBI ATTAAT 1 cut(s) 216
PspN4I GGNNCC 3 cut(s) 6, 24, 265
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 216, 243, 325
SatI GCNGC 2 cut(s) 152, 282
Sau3AI GATC 2 cut(s) 130, 221
SetI ASST 4 cut(s) 111, 153, 180, 283
Sse9I AATT 1 cut(s) 240
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 33
TasI AATT 1 cut(s) 240
TatI WGTACW 1 cut(s) 171
Tru1I TTAA 3 cut(s) 216, 243, 325
Tru9I TTAA 3 cut(s) 216, 243, 325
TseI GCWGC 2 cut(s) 151, 281
VspI ATTAAT 1 cut(s) 216
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.