Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Forward (+)

10383391 .. 10387421

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G131900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCATCAAGGATGGCTGCAAGGTTTGTTACTCGGAGGCTGTCAAGCAGTGGAAAAGTGCTTAGTGAGGAGGAAAGAGCTGCAGAGAACGTTTACATTAAGAAAACCGAGCAAGAGAAGCTGCAGAAACTTGCACGTAAAGGCCCTAAACCAGAAGAGAACCCAACTGCAAGCTCAGAGGGCTCGATATCTGATGCCAAACCAAGTGGCTCTACCTCTGGAGAATCAACTGCCAAAGTATCCACTGACAAGTACCGGAATTATGCTGTTGTAGCAGGTGTTGTAACTGTTGGCGCTGCTGCAGGTTGGTATCTCAAATCTAGTGGAAAGAAACAAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.43

Weight (kDa)

9.62

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	2 cut(s)	266, 293
AclI	AACGTT	1 cut(s)	90
AfaI	GTAC	1 cut(s)	254
AluBI	AGCT	3 cut(s)	80, 121, 174
AluI	AGCT	3 cut(s)	80, 121, 174
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	5 cut(s)	17, 80, 121, 296, 299
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	185
BbvI	GCAGC	5 cut(s)	4, 67, 108, 283, 286
BccI	CCATC	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	3 cut(s)	81, 122, 300
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	2 cut(s)	266, 293
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	5 cut(s)	18, 81, 122, 297, 300
BlsI	GCNGC	5 cut(s)	19, 82, 123, 298, 301
BmgT120I	GGNCC	1 cut(s)	143
BmsI	GCATC	2 cut(s)	14, 184
BpmI	CTGGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	255
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	5 cut(s)	4, 67, 108, 283, 286
BshFI	GGCC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	256
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	188
BspMAI	CTGCAG	3 cut(s)	85, 126, 304
BspMI	ACCTGC	2 cut(s)	266, 293
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	62, 175
BstF5I	GGATG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 180, 272
BstSFI	CTRYAG	3 cut(s)	81, 122, 300
BstV1I	GCAGC	5 cut(s)	4, 67, 108, 283, 286
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 243
BveI	ACCTGC	2 cut(s)	266, 293
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	4 cut(s)	187, 222, 304, 339
CviJI	RGCY	8 cut(s)	17, 40, 80, 121, 144, 174, 183, 210
CviKI_1	RGCY	8 cut(s)	17, 40, 80, 121, 144, 174, 183, 210
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	62, 175
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	185
FaiI	YATR	1 cut(s)	264
Fnu4HI	GCNGC	5 cut(s)	18, 81, 122, 297, 300
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	5 cut(s)	18, 81, 122, 297, 300
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	5 cut(s)	18, 81, 122, 297, 300
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	256
HhaI	GCGC	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	36, 178, 193
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	90, 136
HpyCH4V	TGCA	7 cut(s)	20, 83, 124, 134, 170, 302, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 180, 272
HpyF3I	CTNAG	2 cut(s)	62, 175
HpySE526I	ACGT	2 cut(s)	90, 136
HspAI	GCGC	1 cut(s)	294
LpnPI	CCDG	6 cut(s)	165, 204, 261, 269, 288, 329
Lsp1109I	GCAGC	5 cut(s)	4, 67, 108, 283, 286
LweI	GCATC	2 cut(s)	14, 184
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	90, 136
MaeIII	GTNAC	2 cut(s)	28, 283
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	5 cut(s)	30, 61, 64, 172, 226
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	118, 180, 272
PaqCI	CACCTGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	19, 82, 123, 298, 301
Ppu21I	YACGTR	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	3 cut(s)	85, 126, 304
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	5 cut(s)	18, 81, 122, 297, 300
Sau96I	GGNCC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	9 cut(s)	26, 82, 93, 123, 139, 176, 218, 280, 307
SfaNI	GCATC	2 cut(s)	14, 184
SfcI	CTRYAG	3 cut(s)	81, 122, 300
Sse9I	AATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	93, 139
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	55, 250
TseI	GCWGC	5 cut(s)	17, 80, 121, 296, 299
TspRI	CASTG	2 cut(s)	55, 250
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.