Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Reverse (-)

13639686 .. 13642099

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCATCAAGGATGGCTGCAAGGTTTGTGCCTCGGAGGTTTTCAAGCAGTGGAAAAGTTCTCAGTGAGGAGGAAAAAGCTGCAGAGAATGTTTACATCAAGAAAATCGAGCAAGAGAAGCTGGAGAAGCTTGCACGTAAAGGCCTTAAACCAGAAGAGAAGCCAACTGGAAGCTCAGGGGGCCCAGTCTCTGATGCCAAACCTAGTGCCTCTTCCTCCGGAGCATCAACAGCCAAGGTATCGACTGACAAGTACCGGAATTATGCTGTTGTAGCTGGTGTTATGACTGCTGCTGCTTCTCTCGGTTGGTATCTCAAAGCTAGTCGAAAGAAGGAAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.49

Weight (kDa)

9.76

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	218
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	45
AluBI	AGCT	6 cut(s)	80, 121, 130, 174, 275, 320
AluI	AGCT	6 cut(s)	80, 121, 130, 174, 275, 320
Alw26I	GTCTC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	2 cut(s)	142, 181
ApaI	GGGCCC	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	17, 80, 290, 293
AspS9I	GGNCC	2 cut(s)	181, 182
BaeGI	GKGCMC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	185
BbvI	GCAGC	4 cut(s)	4, 67, 277, 280
BccI	CCATC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	204, 321
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	4 cut(s)	18, 81, 291, 294
BlsI	GCNGC	4 cut(s)	19, 82, 292, 295
BmgT120I	GGNCC	2 cut(s)	181, 182
BmiI	GGNNCC	2 cut(s)	182, 183
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	14, 184, 233
BmuI	ACTGGG	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	32, 234
BsaWI	WCCGGW	2 cut(s)	218, 255
Bse1I	ACTGG	2 cut(s)	172, 185
BseAI	TCCGGA	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	32, 234
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	76, 189
BseNI	ACTGG	2 cut(s)	172, 185
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	4, 67, 277, 280
BshFI	GGCC	2 cut(s)	144, 183
BsiSI	CCGG	2 cut(s)	219, 256
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	144, 183
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	218
BspANI	GGCC	2 cut(s)	144, 183
BspCNI	CTCAG	2 cut(s)	75, 188
BspEI	TCCGGA	1 cut(s)	218
BspLI	GGNNCC	2 cut(s)	182, 183
BspMAI	CTGCAG	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	172, 185
BssECI	CCNNGG	2 cut(s)	32, 234
BssT1I	CCWWGG	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	150, 217
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	62, 175
BstF5I	GGATG	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 127, 180, 230, 272
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	4 cut(s)	4, 67, 277, 280
BsuRI	GGCC	2 cut(s)	144, 183
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 70
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	181, 182
Csp6I	GTAC	1 cut(s)	253
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	62, 175
Eam1104I	CTCTTC	2 cut(s)	150, 217
EarI	CTCTTC	2 cut(s)	150, 217
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	234
FaiI	YATR	2 cut(s)	264, 284
Fnu4HI	GCNGC	4 cut(s)	18, 81, 291, 294
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	18, 81, 291, 294
FspBI	CTAG	2 cut(s)	204, 321
GluI	GCNGC	4 cut(s)	18, 81, 291, 294
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	144, 183
HapII	CCGG	2 cut(s)	219, 256
HindIII	AAGCTT	1 cut(s)	128
HpaII	CCGG	2 cut(s)	219, 256
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	36, 193
Hpy188III	TCNNGA	2 cut(s)	100, 219
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	20, 83, 134, 343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 127, 180, 230, 272
HpyF3I	CTNAG	2 cut(s)	62, 175
HpySE526I	ACGT	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	9 cut(s)	107, 153, 162, 165, 198, 232, 261, 269, 329
Lsp1109I	GCAGC	4 cut(s)	4, 67, 277, 280
LweI	GCATC	3 cut(s)	14, 184, 233
MaeI	CTAG	2 cut(s)	204, 321
MaeII	ACGT	1 cut(s)	136
MboII	GAAGA	3 cut(s)	167, 204, 347
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	6 cut(s)	30, 42, 61, 64, 220, 226
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	1 cut(s)	147
MspI	CCGG	2 cut(s)	219, 256
MwoI	GCNNNNNNNGC	5 cut(s)	118, 127, 180, 230, 272
NlaIV	GGNNCC	2 cut(s)	182, 183
PceI	AGGCCT	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	19, 82, 292, 295
Ppu21I	YACGTR	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	182, 183
PspOMI	GGGCCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	181, 182
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	18, 81, 291, 294
Sau96I	GGNCC	2 cut(s)	181, 182
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	3 cut(s)	14, 184, 233
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	259
SseBI	AGGCCT	1 cut(s)	144
SspMI	CTAG	2 cut(s)	204, 321
StuI	AGGCCT	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	234
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	108, 242, 325
TasI	AATT	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	55, 70
TseI	GCWGC	4 cut(s)	17, 80, 290, 293
TspRI	CASTG	2 cut(s)	55, 70
XspI	CTAG	2 cut(s)	204, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.