Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Reverse (-)

18197531 .. 18200332

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCATCAAGGATGGCTGCAAGGTTTTTCTCTCGGAGGATGTCAAGTAGTGGAAAGATACTGAGCGAAGAGGAAAGAGCTGCAGAAAATGTTTATATCAAGAAAACTGAGCAAGAGAAGCTTGAGAAGCTTGCACGAAAGGGTCCTAAACCAGAAGACAAAGCAACTGCAGGCCCGGGGGAGTCGATAACTGATGCCAAGCCAAGTGGCTCAAGCTCAGGTTCTGGAGCATCAACTGCCAAAGTATCAACTGACAAGTACAGGAATTATGCTGTTGTCGCAGGTGTTGTGACTGCTTTTGCTGCCCTGGGATGGTATATGAAGGGAAGTGAAAAGAAGGCAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.64

Weight (kDa)

9.58

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	4 cut(s)	80, 121, 130, 216
AluI	AGCT	4 cut(s)	80, 121, 130, 216
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	3 cut(s)	17, 80, 302
AspS9I	GGNCC	2 cut(s)	143, 173
AsuC2I	CCSGG	2 cut(s)	176, 177
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	4, 67, 289
BccI	CCATC	2 cut(s)	7, 306
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	2 cut(s)	176, 177
BfmI	CTRYAG	2 cut(s)	81, 168
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	3 cut(s)	18, 81, 303
BlsI	GCNGC	3 cut(s)	19, 82, 304
Bme1390I	CCNGG	3 cut(s)	176, 177, 308
Bme18I	GGWCC	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	143, 173
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	176, 177, 308
BmsI	GCATC	3 cut(s)	14, 184, 239
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	143, 196
BpuMI	CCSGG	2 cut(s)	176, 177
BsaJI	CCNNGG	4 cut(s)	175, 176, 306, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	4 cut(s)	175, 176, 306, 307
BseGI	GGATG	3 cut(s)	18, 45, 317
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	53, 99, 231
BseXI	GCAGC	3 cut(s)	4, 67, 289
BshFI	GGCC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	312
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	175
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	3 cut(s)	54, 100, 230
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	2 cut(s)	85, 172
BspMI	ACCTGC	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	175, 176, 306, 307
Bst2UI	CCWGG	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	132, 172
BstDEI	CTNAG	3 cut(s)	62, 108, 217
BstF5I	GGATG	3 cut(s)	18, 45, 317
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 127, 236, 278, 302
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	174, 175, 306
BstSFI	CTRYAG	2 cut(s)	81, 168
BstV1I	GCAGC	3 cut(s)	4, 67, 289
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	18, 45, 317
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	132, 172
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	143, 173
Cfr9I	CCCGGG	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviJI	RGCY	8 cut(s)	17, 80, 121, 130, 174, 202, 210, 216
CviKI_1	RGCY	8 cut(s)	17, 80, 121, 130, 174, 202, 210, 216
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	3 cut(s)	62, 108, 217
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	306
FaiI	YATR	4 cut(s)	96, 270, 318, 320
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
Fnu4HI	GCNGC	3 cut(s)	18, 81, 303
FokI	GGATG	3 cut(s)	25, 52, 324
Fsp4HI	GCNGC	3 cut(s)	18, 81, 303
GluI	GCNGC	3 cut(s)	18, 81, 303
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	176
HindIII	AAGCTT	2 cut(s)	119, 128
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	100, 225
HpyAV	CCTTC	2 cut(s)	316, 331
HpyCH4V	TGCA	5 cut(s)	20, 83, 134, 170, 349
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 127, 236, 278, 302
HpyF3I	CTNAG	3 cut(s)	62, 108, 217
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	3 cut(s)	4, 67, 289
LweI	GCATC	3 cut(s)	14, 184, 239
MaeIII	GTNAC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	80, 167
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	2 cut(s)	30, 64
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	3 cut(s)	176, 177, 308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	5 cut(s)	118, 127, 236, 278, 302
NciI	CCSGG	2 cut(s)	176, 177
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	272
PasI	CCCWGGG	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	19, 82, 304
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	143, 173
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	2 cut(s)	85, 172
PstNI	CAGNNNCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	3 cut(s)	18, 81, 303
Sau96I	GGNCC	2 cut(s)	143, 173
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	176, 177, 308
SetI	ASST	7 cut(s)	26, 82, 123, 132, 218, 223, 286
SfaNI	GCATC	3 cut(s)	14, 184, 239
SfcI	CTRYAG	2 cut(s)	81, 168
SinI	GGWCC	1 cut(s)	143
SmaI	CCCGGG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	122, 211
SmoI	CTYRAG	2 cut(s)	122, 211
Sse9I	AATT	1 cut(s)	265
StyD4I	CCNGG	3 cut(s)	174, 175, 306
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	17, 80, 302
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	335
TspMI	CCCGGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	143
XmaI	CCCGGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.