Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Forward (+)

42494455 .. 42495284

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGCATCAAGGTTGGCTGCAAGGTTTTTCTCTCAGAGGATGTCAAGCAGTGGAAAGATACTGAGCGAAGAGGAAAGAGCTGCAGAAAATGTTTACATCAAGGTCTGTTTATCATTCTGTGACAGATGTGGCCATATTGAGGTTCATGGTGGAGGCCTGCTAGGGTCCTATGTTGGCCGCATTCAGTGTGACTCTGAACCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.48

Weight (kDa)

7.69

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AcoI	YGGCCR	2 cut(s)	130, 175
AfiI	CCNNNNNNNGG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
AoxI	GGCC	3 cut(s)	130, 154, 175
ApeKI	GCWGC	2 cut(s)	17, 80
AspS9I	GGNCC	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	4, 67
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	3 cut(s)	18, 81, 178
BlsI	GCNGC	3 cut(s)	19, 82, 179
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	47, 53
BseXI	GCAGC	2 cut(s)	4, 67
BshFI	GGCC	3 cut(s)	132, 156, 177
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	132, 156, 177
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	3 cut(s)	132, 156, 177
BspCNI	CTCAG	2 cut(s)	46, 54
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	33, 62
BstF5I	GGATG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	4, 67
BsuRI	GGCC	3 cut(s)	132, 156, 177
BtsCI	GGATG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 191
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	165
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	5 cut(s)	17, 80, 132, 156, 177
CviKI_1	RGCY	5 cut(s)	17, 80, 132, 156, 177
DdeI	CTNAG	2 cut(s)	33, 62
EaeI	YGGCCR	2 cut(s)	130, 175
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	165
FaeI	CATG	1 cut(s)	149
FaiI	YATR	3 cut(s)	135, 147, 171
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	18, 81, 178
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	18, 81, 178
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	18, 81, 178
HaeIII	GGCC	3 cut(s)	132, 156, 177
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	36, 196
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	20, 83
HpyF3I	CTNAG	2 cut(s)	33, 62
Hsp92II	CATG	1 cut(s)	149
LpnPI	CCDG	1 cut(s)	170
Lsp1109I	GCAGC	2 cut(s)	4, 67
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	119, 188
MboII	GAAGA	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	30, 64, 133, 146
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	119, 188
PceI	AGGCCT	1 cut(s)	156
PctI	GAATGC	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	19, 82, 179
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	165
PspPPI	RGGWCCY	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	85
SatI	GCNGC	3 cut(s)	18, 81, 178
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	185
SetI	ASST	5 cut(s)	14, 26, 82, 105, 144
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	81
SgeI	CNNG	7 cut(s)	21, 33, 57, 112, 158, 169, 173
SinI	GGWCC	1 cut(s)	165
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	156
TauI	GCSGC	1 cut(s)	180
TscAI	CASTG	2 cut(s)	55, 191
TseFI	GTSAC	2 cut(s)	119, 188
TseI	GCWGC	2 cut(s)	17, 80
Tsp45I	GTSAC	2 cut(s)	119, 188
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	55, 191
VpaK11BI	GGWCC	1 cut(s)	165
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.