Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006033

Physical Location & Seq

Genomic Coordinates Reverse (-)

42383339 .. 42385999

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCATCAAGGTTGGCTGCAAGGTTTTTCTCTCGGAGGATGTCAAGCAGTGGAAAGATACTGAGTGAAGAGGAAAAAGCTGCAGAAAATGTTACATCAAGGAATATGGAGTTAGCTTGGGATGTTAAAACTGAGCAAGAGAAGCTTGAGAAGCTTGCACGAAAGGGCCCTAAACCAGAAGACAAAGCAACTGCAGGCCCGGGGGAATCGATAACTGATGCCAAACCAAGTGATTCGAGCTCAACTGCCAAAGTATCAACTGACAAGTACAGGAATTATGCTGTTGTAGCTGGTGTTATGACTGCTGCTGCTGCTCTGGGATGGTATATCAAAGGAAGTGAAAAGAAGGCAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043094 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070013 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.13

Weight (kDa)

9.12

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27730 AT2G27730 AT2G27730 AT2G27730
fragaria_vesca	FvH4_3g25100 FvH4_5g26820
malus_domestica	MD03G1147400.v1.1 MD11G1166100.v1.1
prunus_persica	Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1 Prupe.6G131900_v2.0.a1
pyrus_communis	pycom03g10130 pycom11g13830
rosa_chinensis	RchiOBHm_Chr5g0045641 RchiOBHm_Chr5g0046361
rosa_multiflora	Rmu_sc0018107.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035580
rosa_rugosa	Rorug05G0223800 Rorug05G0223900 Rorug05G0224000
rosa_samantha	Rh5AG304800 Rh5BG313500 Rh5CG339800 Rh5DG324200 Rh6DG238500
rosa_wichuraiana	Rw0G020590 Rw5G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	269
AluBI	AGCT	6 cut(s)	80, 116, 145, 154, 240, 290
AluI	AGCT	6 cut(s)	80, 116, 145, 154, 240, 290
Alw21I	GWGCWC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	2 cut(s)	166, 196
ApaI	GGGCCC	1 cut(s)	170
ApeKI	GCWGC	5 cut(s)	17, 80, 305, 308, 311
AspS9I	GGNCC	3 cut(s)	166, 167, 197
AsuC2I	CCSGG	2 cut(s)	200, 201
AvaI	CYCGRG	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	170
BanII	GRGCYC	2 cut(s)	170, 242
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	5 cut(s)	4, 67, 292, 295, 298
BccI	CCATC	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	200, 201
BfmI	CTRYAG	2 cut(s)	81, 192
BisI	GCNGC	5 cut(s)	18, 81, 306, 309, 312
BlsI	GCNGC	5 cut(s)	19, 82, 307, 310, 313
Bme1390I	CCNGG	2 cut(s)	200, 201
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	166, 167, 197
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	200, 201
BmsI	GCATC	2 cut(s)	14, 208
BpiI	GAAGAC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	2 cut(s)	200, 201
Bsa29I	ATCGAT	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	199, 200
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	199, 200
BseGI	GGATG	3 cut(s)	45, 127, 326
BseMII	CTCAG	2 cut(s)	53, 123
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	5 cut(s)	4, 67, 292, 295, 298
BshFI	GGCC	2 cut(s)	168, 198
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	200
BsnI	GGCC	2 cut(s)	168, 198
BsoBI	CYCGRG	1 cut(s)	199
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	170, 242
BspANI	GGCC	2 cut(s)	168, 198
BspCNI	CTCAG	2 cut(s)	54, 124
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	2 cut(s)	85, 196
BssECI	CCNNGG	2 cut(s)	199, 200
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	156, 196
BstDEI	CTNAG	2 cut(s)	62, 132
BstF5I	GGATG	3 cut(s)	45, 127, 326
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 151, 287, 311
BstSCI	CCNGG	2 cut(s)	198, 199
BstSFI	CTRYAG	2 cut(s)	81, 192
BstSLI	GKGCMC	1 cut(s)	170
BstV1I	GCAGC	5 cut(s)	4, 67, 292, 295, 298
BstV2I	GAAGAC	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	168, 198
BsuTUI	ATCGAT	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	45, 127, 326
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	156, 196
Cfr13I	GGNCC	3 cut(s)	166, 167, 197
Cfr9I	CCCGGG	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	268
CviJI	RGCY	9 cut(s)	17, 80, 116, 145, 154, 168, 198, 240, 290
CviKI_1	RGCY	9 cut(s)	17, 80, 116, 145, 154, 168, 198, 240, 290
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	62, 132
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	170, 242
Eco53kI	GAGCTC	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	240
EcoO109I	RGGNCCY	2 cut(s)	166, 167
EcoT38I	GRGCYC	2 cut(s)	170, 242
FaiI	YATR	4 cut(s)	107, 279, 299, 327
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
Fnu4HI	GCNGC	5 cut(s)	18, 81, 306, 309, 312
FokI	GGATG	3 cut(s)	52, 134, 333
FriOI	GRGCYC	2 cut(s)	170, 242
Fsp4HI	GCNGC	5 cut(s)	18, 81, 306, 309, 312
GluI	GCNGC	5 cut(s)	18, 81, 306, 309, 312
HaeIII	GGCC	2 cut(s)	168, 198
HapII	CCGG	1 cut(s)	200
HindIII	AAGCTT	2 cut(s)	143, 152
HinfI	GANTC	2 cut(s)	206, 233
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	5 cut(s)	20, 83, 158, 194, 358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 151, 287, 311
HpyF3I	CTNAG	2 cut(s)	62, 132
LpnPI	CCDG	7 cut(s)	180, 189, 213, 256, 276, 302, 344
Lsp1109I	GCAGC	5 cut(s)	4, 67, 292, 295, 298
LweI	GCATC	2 cut(s)	14, 208
MaeIII	GTNAC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	80, 191
MhlI	GDGCHC	2 cut(s)	170, 242
MluCI	AATT	1 cut(s)	274
MnlI	CCTC	2 cut(s)	30, 64
MseI	TTAA	1 cut(s)	126
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	200, 201
MwoI	GCNNNNNNNGC	4 cut(s)	142, 151, 287, 311
NciI	CCSGG	2 cut(s)	200, 201
NlaIV	GGNNCC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	206, 233
PkrI	GCNGC	5 cut(s)	19, 82, 307, 310, 313
Psp124BI	GAGCTC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	168
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	166, 167, 197
PstI	CTGCAG	2 cut(s)	85, 196
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	5 cut(s)	18, 81, 306, 309, 312
Sau96I	GGNCC	3 cut(s)	166, 167, 197
ScrFI	CCNGG	2 cut(s)	200, 201
SduI	GDGCHC	2 cut(s)	170, 242
SetI	ASST	8 cut(s)	14, 26, 82, 118, 147, 156, 242, 292
SfaNI	GCATC	2 cut(s)	14, 208
SfcI	CTRYAG	2 cut(s)	81, 192
SmaI	CCCGGG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	274
SstI	GAGCTC	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	198, 199
TaqI	TCGA	2 cut(s)	209, 236
TasI	AATT	1 cut(s)	274
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	206, 233
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	5 cut(s)	17, 80, 305, 308, 311
TspMI	CCCGGG	1 cut(s)	199
TspRI	CASTG	1 cut(s)	55
XmaI	CCCGGG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.