Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004971

Physical Location & Seq

Genomic Coordinates Reverse (-)

11847109 .. 11849559

Gene Structure 2451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTCGATACAAAGATGAAACCCCAGCGGTTAGGGTTTATACAGTTTGCGATGAATCAAGATACATGATAGTACGTAATGTCCCAGCTTTGGGTTGTGGTGATGATCTCATGAGATTATTCATGACTTATGGAGAAGTTGAAGAATGTAAACCTATGGATGCAGAAGACTGTGCGGAGTTCACGGATGTCTACTGGATCAAGTTTCGTCTCATCACTAATGCTAGATTTGCAAAGAGGAAGTTGGATGAATCAAGTTTTTTGGGAAATCGGCTCCAAATTTCATATGCTCCTGAATACGAAAATGTAAATGACACAAAGGATAAGTTAGAATCTAGAAGGAAAGAAGTGCTTGCAAGACTGAACCCCCAGAAAGAAAAGAGCACCTCCCAAGTTACAAAATTGGCTGGACCAGCTTTGACCCAAACAGACAATGTTTCCTCACAGCGGAGAGAGATGGAGTACCAATTCCATAGAGGAAATGCTCCTGTTACTCGAGTTTCATCAGATCAGGAGTATTTTGCGTCATCTTCAATGAATCAGACGGTTAAAACTGTGAGGGAGAAACTCAATAAGATTGAAGAAAGTGGTAACCAAAAGAGGTTACAACCAAGCAGCCAAACACAACCTGAAGAAAGTGGTAACCAAAAGAGGTTACAACCAAGCAGCCAAATACAACCTGACTTGAAGAGAACCCGAGTGGATAACCGAAGAAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

240

Amino Acids

27.84

Weight (kDa)

9.08

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27790 AT2G27790 AT2G27790 AT2G27790 AT5G27300 AT5G27300 AT5G27300
fragaria_vesca	FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340
malus_domestica	MD11G1211500.v1.1
prunus_persica	Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1
pyrus_communis	pycom11g18680
rosa_chinensis	RchiOBHm_Chr5g0041131
rosa_laevigata	RLG00000034028
rosa_multiflora	Rmu_co7980486.1_g000001 Rmu_sc0001760.1_g000004 Rmu_sc0009425.1_g000002 Rmu_sc0039274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039540
rosa_rugosa	Rorug05G0190000
rosa_samantha	Rh5AG275900 Rh5BG280600 Rh5CG312800 Rh5DG288900
rosa_wichuraiana	Rw5G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	3 cut(s)	29, 176, 448
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	2 cut(s)	75, 464
AfiI	CCNNNNNNNGG	3 cut(s)	91, 92, 447
AgsI	TTSAA	4 cut(s)	143, 534, 581, 688
AluBI	AGCT	2 cut(s)	89, 416
AluI	AGCT	2 cut(s)	89, 416
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	2 cut(s)	495, 696
ApeKI	GCWGC	2 cut(s)	615, 666
ApoI	RAATTY	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	113
AvaI	CYCGRG	2 cut(s)	495, 696
AvaII	GGWCC	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	627, 678
BccI	CCATC	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	225, 336
BisI	GCNGC	2 cut(s)	616, 667
BlsI	GCNGC	2 cut(s)	617, 668
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	2 cut(s)	495, 696
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	275
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 92, 447
Bse1I	ACTGG	1 cut(s)	200
BseGI	GGATG	3 cut(s)	166, 193, 253
BseLI	CCNNNNNNNGG	3 cut(s)	91, 92, 447
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	627, 678
BseYI	CCCAGC	2 cut(s)	25, 85
BsiHKAI	GWGCWC	1 cut(s)	386
BsiHKCI	CYCGRG	2 cut(s)	495, 696
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	91, 92, 447
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	68
BsoBI	CYCGRG	2 cut(s)	495, 696
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	106, 198, 508
BspACI	CCGC	3 cut(s)	29, 176, 448
BspHI	TCATGA	2 cut(s)	111, 123
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	106, 198, 508
Bst4CI	ACNGT	4 cut(s)	46, 173, 547, 556
Bst6I	CTCTTC	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	354
BstEII	GGTNACC	2 cut(s)	590, 641
BstF5I	GGATG	3 cut(s)	166, 193, 253
BstKTI	GATC	3 cut(s)	109, 201, 511
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	106, 198, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 413
BstPI	GGTNACC	2 cut(s)	590, 641
BstSNI	TACGTA	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	627, 678
BstV2I	GAAGAC	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	166, 193, 253
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	2 cut(s)	111, 123
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	74, 463
CviAII	CATG	3 cut(s)	67, 112, 124
CviJI	RGCY	6 cut(s)	89, 274, 407, 416, 618, 669
CviKI_1	RGCY	6 cut(s)	89, 274, 407, 416, 618, 669
CviQI	GTAC	2 cut(s)	74, 463
DpnI	GATC	3 cut(s)	108, 200, 510
DpnII	GATC	3 cut(s)	106, 198, 508
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
Eco105I	TACGTA	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	2 cut(s)	495, 696
Eco91I	GGTNACC	2 cut(s)	590, 641
EcoO65I	GGTNACC	2 cut(s)	590, 641
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	3 cut(s)	70, 115, 127
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	3 cut(s)	66, 111, 123
FauNDI	CATATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	616, 667
FokI	GGATG	3 cut(s)	173, 200, 260
Fsp4HI	GCNGC	2 cut(s)	616, 667
FspBI	CTAG	2 cut(s)	225, 336
GluI	GCNGC	2 cut(s)	616, 667
GsaI	CCCAGC	2 cut(s)	29, 89
HgaI	GACGC	1 cut(s)	513
Hin1II	CATG	3 cut(s)	70, 115, 127
HinfI	GANTC	4 cut(s)	56, 251, 332, 538
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	152, 183, 193
Hpy188I	TCNGA	2 cut(s)	508, 543
Hpy188III	TCNNGA	6 cut(s)	60, 112, 124, 293, 336, 512
Hpy8I	GTNNAC	3 cut(s)	152, 183, 193
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	4 cut(s)	46, 173, 547, 556
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	164, 233, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 413
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	70, 115, 127
Kzo9I	GATC	3 cut(s)	106, 198, 508
LmnI	GCTCC	3 cut(s)	279, 295, 490
Lsp1109I	GCAGC	2 cut(s)	627, 678
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	225, 336
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	6 cut(s)	394, 490, 590, 603, 641, 654
MalI	GATC	3 cut(s)	108, 200, 510
MboI	GATC	3 cut(s)	106, 198, 508
MboII	GAAGA	7 cut(s)	155, 179, 522, 593, 644, 700, 723
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	3 cut(s)	279, 401, 467
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	231, 397, 451, 470, 552, 594, 645
MseI	TTAA	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	29, 448
MwoI	GCNNNNNNNGC	2 cut(s)	230, 413
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	3 cut(s)	106, 198, 508
NlaIII	CATG	3 cut(s)	70, 115, 127
NlaIV	GGNNCC	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	495
PagI	TCATGA	2 cut(s)	111, 123
PfeI	GAWTC	4 cut(s)	56, 251, 332, 538
PkrI	GCNGC	2 cut(s)	617, 668
Ppu21I	YACGTR	1 cut(s)	77
PspEI	GGTNACC	2 cut(s)	590, 641
PspFI	CCCAGC	2 cut(s)	25, 85
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	410
PspXI	VCTCGAGB	1 cut(s)	495
RsaI	GTAC	2 cut(s)	75, 464
RsaNI	GTAC	2 cut(s)	74, 463
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	2 cut(s)	616, 667
Sau3AI	GATC	3 cut(s)	106, 198, 508
Sau96I	GGNCC	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	9 cut(s)	79, 91, 157, 389, 418, 605, 631, 656, 682
SfaNI	GCATC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
SnaBI	TACGTA	1 cut(s)	77
Sse9I	AATT	3 cut(s)	279, 401, 467
SsiI	CCGC	3 cut(s)	29, 176, 448
SspMI	CTAG	2 cut(s)	225, 336
TaaI	ACNGT	4 cut(s)	46, 173, 547, 556
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	7, 496
TasI	AATT	3 cut(s)	279, 401, 467
TfiI	GAWTC	4 cut(s)	56, 251, 332, 538
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TseI	GCWGC	2 cut(s)	615, 666
TspDTI	ATGAA	7 cut(s)	33, 69, 112, 264, 273, 492, 551
TspGWI	ACGGA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	279
XbaI	TCTAGA	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	2 cut(s)	225, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.