Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004971

Physical Location & Seq

Genomic Coordinates Reverse (-)

36972146 .. 36974820

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG275900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCTCGATACAAAGATGAACCTCCTGCTGTTCGTGTTTACACAGTCTGTGACGAATCAAGGTATTTGATAGTGAGGAATGTTCCATCTTTGGGATGCGGTGATGAGCTGTTGACGCTGTTCTCATCCTATGGAGATGTAGAGGAGTGTAAACCAATGGATGCAGAAGATTGTGAGCAATTCACTGATGTTTACTGGATAAAGTTTCGTCTTGTCAGCAACGCCAGGTTTGCAAAGAGGAAGTTAGACGAGTATGTTTTCCTTGGAAATCGACTGGGGGTTTCTTATGCTCCTCAGTTTGAGAGCCTTGCCGACACAAAGGACAAACTGGAAGGCAGGAGAAGAGAAGTTCTAGCACGGTTGAACCCTTGTGGTTCTAAAGGGTCCAGAGTTAACAAGTCAGGTGCTTTAACCGAGGTTTCGTTCGATGCAACCCCATCCCAGACCTACAGCGATTCCCAACGTGTAAACTGTAGCCCAAGGGACTATGGACAATCACAACTTACTTCGCAAGTTAATAATCCTCCCATTACAAGAGTTTCCTCTGAGAAGGAATATTTTGCTTCCGCATCCATGAATCAAACCGTCCAGATGGTCAGGGAAAAGCTCGATAAGGTAAGGACCTCAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

211

Amino Acids

23.92

Weight (kDa)

7.5

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27790 AT2G27790 AT2G27790 AT2G27790 AT5G27300 AT5G27300 AT5G27300
fragaria_vesca	FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340
malus_domestica	MD11G1211500.v1.1
prunus_persica	Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1
pyrus_communis	pycom11g18680
rosa_chinensis	RchiOBHm_Chr5g0041131
rosa_laevigata	RLG00000034028
rosa_multiflora	Rmu_co7980486.1_g000001 Rmu_sc0001760.1_g000004 Rmu_sc0009425.1_g000002 Rmu_sc0039274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039540
rosa_rugosa	Rorug05G0190000
rosa_samantha	Rh5AG275900 Rh5BG280600 Rh5CG312800 Rh5DG288900
rosa_wichuraiana	Rw5G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 567
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	109, 607
AluI	AGCT	2 cut(s)	109, 607
AspS9I	GGNCC	2 cut(s)	384, 621
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	384, 621
BccI	CCATC	3 cut(s)	94, 445, 586
BciT130I	CCWGG	1 cut(s)	226
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	448, 472
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	2 cut(s)	384, 621
BmgT120I	GGNCC	2 cut(s)	384, 621
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	4 cut(s)	86, 151, 418, 578
BmuI	ACTGGG	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	262, 414, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	200, 279, 333
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	262, 414, 479
BseGI	GGATG	5 cut(s)	101, 125, 166, 437, 569
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	308, 537
BseNI	ACTGG	3 cut(s)	200, 279, 333
BseRI	GAGGAG	2 cut(s)	158, 282
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	497
BspACI	CCGC	2 cut(s)	99, 567
BspCNI	CTCAG	2 cut(s)	307, 538
BspLI	GGNNCC	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	200, 279, 333
BssECI	CCNNGG	3 cut(s)	262, 414, 479
BssT1I	CCWWGG	2 cut(s)	262, 479
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	4 cut(s)	46, 360, 473, 586
Bst6I	CTCTTC	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	294, 546
BstF5I	GGATG	5 cut(s)	101, 125, 166, 437, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 230
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	2 cut(s)	448, 472
BtsCI	GGATG	5 cut(s)	101, 125, 166, 437, 569
BtsIMutI	CAGTG	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	384, 621
CseI	GACGC	1 cut(s)	124
CviAII	CATG	2 cut(s)	574, 633
CviJI	RGCY	4 cut(s)	109, 306, 477, 607
CviKI_1	RGCY	4 cut(s)	109, 306, 477, 607
DdeI	CTNAG	2 cut(s)	294, 546
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	262, 479
Eco47I	GGWCC	2 cut(s)	384, 621
EcoO109I	RGGNCCY	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	262, 479
ErhI	CCWWGG	2 cut(s)	262, 479
FaeI	CATG	2 cut(s)	577, 636
FaiI	YATR	6 cut(s)	132, 255, 288, 489, 575, 634
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	2 cut(s)	573, 632
FokI	GGATG	5 cut(s)	108, 112, 173, 424, 556
FspBI	CTAG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	577, 636
HincII	GTYRAC	2 cut(s)	114, 394
HindII	GTYRAC	2 cut(s)	114, 394
HinfI	GANTC	3 cut(s)	56, 455, 577
HpaI	GTTAAC	1 cut(s)	394
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	6 cut(s)	40, 114, 152, 193, 394, 469
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	2 cut(s)	387, 589
Hpy8I	GTNNAC	6 cut(s)	40, 114, 152, 193, 394, 469
HpyAV	CCTTC	2 cut(s)	326, 544
HpyCH4III	ACNGT	4 cut(s)	46, 360, 473, 586
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	164, 233, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 230
HpyF3I	CTNAG	2 cut(s)	294, 546
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	2 cut(s)	577, 636
KspAI	GTTAAC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	4 cut(s)	86, 151, 418, 578
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	179, 354
MluCI	AATT	1 cut(s)	179
MseI	TTAA	3 cut(s)	393, 410, 516
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	115, 230
NlaIII	CATG	2 cut(s)	577, 636
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	56, 455, 577
PpuMI	RGGWCCY	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	384, 621
PspPPI	RGGWCCY	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	393, 410, 516
Sau96I	GGNCC	2 cut(s)	384, 621
ScrFI	CCNGG	1 cut(s)	226
SfaNI	GCATC	4 cut(s)	86, 151, 418, 578
SfcI	CTRYAG	2 cut(s)	448, 472
SinI	GGWCC	2 cut(s)	384, 621
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	99, 567
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	262, 479
TaaI	ACNGT	4 cut(s)	46, 360, 473, 586
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	4 cut(s)	7, 271, 426, 609
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	56, 455, 577
Tru1I	TTAA	3 cut(s)	393, 410, 516
Tru9I	TTAA	3 cut(s)	393, 410, 516
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	33, 590
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	384, 621
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.