Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004971

Physical Location & Seq

Genomic Coordinates Forward (+)

30920458 .. 30923870

Gene Structure 3413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1211500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCCTCGATACAAAGATGAACCTCCAGCGGTTCGCGTTTACACAGTTTGTGACGAATCAAGGTATTTGATTGTGAGGAACGTTCCATCTTTGGGTTGCGGCAATGATCTGTTGAAATTGTTTGCATCCTACGGAGAAGTAGAGGAGTGTAAACCAATGGATGAAGCAGATTGTGATCAATTCACCGACGTTTATTGGATAAAATTTCGACTGGTCACCAATGCCAGGTTTGCAAAGAGAAAATTGGATGAGTATGCTTTCCTCGGGAATCGACTTAATGTATCATATGCTCCTGAATTTGAGACCCTTTCTGATACAAAGGATAAGCTGGAAAGCAGGACAAGAGAAGTTCTAGGACGATTGAACCCCAGAAGATCTAAGGGGTCTACAGTCAATAAGTCCGGTGCTTCGACTGACCCTTCTTTGCGTGCAATTCCCACTCAGATTGATTGCTTTCCCCAGCATGTAAACTCAAGTCAAAGGGACTCTGGAGAATCACAACTTGCTTCACACGTTACTAACCCTCCTCTTTCAAGAGTTTCCTCTGATCAGGAGTATTTTCCTTCCCAATCTATGAATCAGACCGTCAAGATGGTGAGGGAGAAGCTCAATAAGGTTCAGTCAAGTAGTGAGCATCTGCAAGATGAGCGTGCATCCAAGAAAACACGGGTGGACAATCGAAGGAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

26.33

Weight (kDa)

8.91

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27790 AT2G27790 AT2G27790 AT2G27790 AT5G27300 AT5G27300 AT5G27300
fragaria_vesca	FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340
malus_domestica	MD11G1211500.v1.1
prunus_persica	Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1
pyrus_communis	pycom11g18680
rosa_chinensis	RchiOBHm_Chr5g0041131
rosa_laevigata	RLG00000034028
rosa_multiflora	Rmu_co7980486.1_g000001 Rmu_sc0001760.1_g000004 Rmu_sc0009425.1_g000002 Rmu_sc0039274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039540
rosa_rugosa	Rorug05G0190000
rosa_samantha	Rh5AG275900 Rh5BG280600 Rh5CG312800 Rh5DG288900
rosa_wichuraiana	Rw5G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	29, 99
AclI	AACGTT	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	203, 296, 687
AfiI	CCNNNNNNNGG	2 cut(s)	92, 225
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	115, 364, 534
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	328, 607
AluI	AGCT	2 cut(s)	328, 607
Alw26I	GTCTC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	263
ApoI	RAATTY	3 cut(s)	203, 296, 687
AsuHPI	GGTGA	3 cut(s)	175, 208, 607
AvaI	CYCGRG	1 cut(s)	263
BccI	CCATC	2 cut(s)	94, 586
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	2 cut(s)	175, 547
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	3 cut(s)	134, 643, 662
BpmI	CTGGAG	2 cut(s)	9, 510
BpuEI	CTTGAG	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 225
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	4 cut(s)	125, 166, 253, 653
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	92, 225
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	2 cut(s)	158, 516
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	92, 225
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	497
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	4 cut(s)	106, 175, 374, 547
BspACI	CCGC	2 cut(s)	29, 99
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	4 cut(s)	106, 175, 374, 547
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	46, 391, 586
BstC8I	GCNNGC	2 cut(s)	429, 651
BstDEI	CTNAG	2 cut(s)	378, 441
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	4 cut(s)	125, 166, 253, 653
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	109, 178, 377, 550
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	106, 175, 374, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 646
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	467
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BtsCI	GGATG	4 cut(s)	125, 166, 253, 653
Cac8I	GCNNGC	2 cut(s)	429, 651
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	1 cut(s)	464
CviJI	RGCY	2 cut(s)	328, 607
CviKI_1	RGCY	2 cut(s)	328, 607
DdeI	CTNAG	2 cut(s)	378, 441
DpnI	GATC	4 cut(s)	108, 177, 376, 549
DpnII	GATC	4 cut(s)	106, 175, 374, 547
Eco31I	GGTCTC	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	467
FaiI	YATR	5 cut(s)	255, 286, 288, 465, 575
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	1 cut(s)	463
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	2 cut(s)	175, 547
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	4 cut(s)	112, 173, 260, 640
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	2 cut(s)	9, 510
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	1 cut(s)	467
HinfI	GANTC	5 cut(s)	56, 268, 485, 494, 577
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	3 cut(s)	175, 208, 607
Hpy166II	GTNNAC	5 cut(s)	40, 152, 387, 469, 673
Hpy188I	TCNGA	4 cut(s)	313, 444, 547, 582
Hpy188III	TCNNGA	6 cut(s)	265, 293, 489, 534, 551, 589
Hpy8I	GTNNAC	5 cut(s)	40, 152, 387, 469, 673
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	429, 573, 675
HpyCH4III	ACNGT	3 cut(s)	46, 391, 586
HpyCH4IV	ACGT	3 cut(s)	81, 189, 513
HpyCH4V	TGCA	5 cut(s)	125, 233, 431, 640, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 646
HpyF3I	CTNAG	2 cut(s)	378, 441
HpySE526I	ACGT	3 cut(s)	81, 189, 513
Hsp92II	CATG	1 cut(s)	467
Ksp22I	TGATCA	2 cut(s)	175, 547
Kzo9I	GATC	4 cut(s)	106, 175, 374, 547
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	3 cut(s)	134, 643, 662
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	3 cut(s)	81, 189, 513
MaeIII	GTNAC	3 cut(s)	50, 214, 514
MalI	GATC	4 cut(s)	108, 177, 376, 549
MboI	GATC	4 cut(s)	106, 175, 374, 547
MboII	GAAGA	1 cut(s)	384
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	7 cut(s)	116, 179, 203, 242, 296, 432, 687
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	9 cut(s)	15, 33, 69, 136, 272, 534, 537, 553, 591
MseI	TTAA	2 cut(s)	276, 691
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	230, 646
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	4 cut(s)	106, 175, 374, 547
NlaIII	CATG	1 cut(s)	467
NmuCI	GTSAC	2 cut(s)	50, 214
NspI	RCATGY	1 cut(s)	467
PfeI	GAWTC	4 cut(s)	56, 268, 494, 577
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	224
PspEI	GGTNACC	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	276, 691
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	4 cut(s)	106, 175, 374, 547
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	9 cut(s)	25, 65, 84, 192, 230, 330, 516, 609, 618
SfaNI	GCATC	3 cut(s)	134, 643, 662
SfcI	CTRYAG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
Sse9I	AATT	7 cut(s)	116, 179, 203, 242, 296, 432, 687
SsiI	CCGC	2 cut(s)	29, 99
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	46, 391, 586
TaiI	ACGT	3 cut(s)	84, 192, 516
TaqI	TCGA	5 cut(s)	7, 208, 271, 410, 679
TasI	AATT	7 cut(s)	116, 179, 203, 242, 296, 432, 687
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	4 cut(s)	56, 268, 494, 577
Tru1I	TTAA	2 cut(s)	276, 691
Tru9I	TTAA	2 cut(s)	276, 691
TseFI	GTSAC	2 cut(s)	50, 214
Tsp45I	GTSAC	2 cut(s)	50, 214
TspDTI	ATGAA	3 cut(s)	33, 177, 590
TspGWI	ACGGA	1 cut(s)	147
XapI	RAATTY	3 cut(s)	203, 296, 687
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.