Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004971

Physical Location & Seq

Genomic Coordinates Reverse (-)

16396672 .. 16399007

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23340.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCCACGGTACAAAGATGAGCCTCCTGCTGTTCGTGTTTACACAGTCTGTGACGAATCAAGGTACTTGATGGTGAGGAATGTTCCATCGTTGGGATGCGGTGATGAGCTGTTGAAACTGTTCTCGTCCTATGGAGATGTAGAAGAGTGTAAACCCATGGATGCAGAAGAGTGTGAGCAATTCACTGATGTTTACTGGATAAAGTTTCGTCTGGTCCGCAATGCCAGGTTTGCAAAGAGGAAACTAGACGAGTATGTTTTCCTTGGTAATCGACTTGGGGTTTCATATGCTCCTCAGTTTGAGAGCCTTGCCGACACAAAGGACAAACTAGAAGGCAGGAGAAGAGAAGTTCTAGCACGACTGAACCCTTGTGGATCTAAAGGGTCCAGAGTTAACAAATCAGGTGGTTTAACGGAGGTTTCATCCGACGCGACCACGTCCCAGACATATAGTGGTCCCCAACTTGTAAACTATAGTCAAAGGGACTACGGGCAATCACAACTTACTTCGCGAGTTAATAAGCCTCCCATTACAAGAGTTTCTTCTGAGAAGGAATATTTTGCTTCCCCATCCATGAATCAAACTGTCCAGATGGTCAGGGAAAAGCTCGATAAGATTCAATCAAGTACCGAGCACCTGCTAGAAGAGCATAAATCCAAGAAAGCAAGGGTGGATAATAGACGGAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

26.41

Weight (kDa)

9.11

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27790 AT2G27790 AT2G27790 AT2G27790 AT5G27300 AT5G27300 AT5G27300
fragaria_vesca	FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340
malus_domestica	MD11G1211500.v1.1
prunus_persica	Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1
pyrus_communis	pycom11g18680
rosa_chinensis	RchiOBHm_Chr5g0041131
rosa_laevigata	RLG00000034028
rosa_multiflora	Rmu_co7980486.1_g000001 Rmu_sc0001760.1_g000004 Rmu_sc0009425.1_g000002 Rmu_sc0039274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039540
rosa_rugosa	Rorug05G0190000
rosa_samantha	Rh5AG275900 Rh5BG280600 Rh5CG312800 Rh5DG288900
rosa_wichuraiana	Rw5G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	645
Acc36I	ACCTGC	1 cut(s)	645
AccII	CGCG	2 cut(s)	431, 511
AciI	CCGC	2 cut(s)	99, 217
AclWI	GGATC	1 cut(s)	382
AfaI	GTAC	3 cut(s)	11, 65, 628
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	115, 620
AjiI	CACGTC	1 cut(s)	438
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	109, 607
AluI	AGCT	2 cut(s)	109, 607
Alw21I	GWGCWC	1 cut(s)	636
AlwI	GGATC	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	214, 384, 455
AsuHPI	GGTGA	2 cut(s)	85, 113
AvaII	GGWCC	3 cut(s)	214, 384, 455
Bbv12I	GWGCWC	1 cut(s)	636
BccI	CCATC	4 cut(s)	64, 94, 577, 586
BciT130I	CCWGG	1 cut(s)	226
BfaI	CTAG	4 cut(s)	245, 329, 353, 641
BfmI	CTRYAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	645
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	3 cut(s)	214, 384, 455
BmgBI	CACGTC	1 cut(s)	438
BmgT120I	GGNCC	3 cut(s)	214, 384, 455
BmiI	GGNNCC	2 cut(s)	385, 457
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	86, 151
BsaJI	CCNNGG	3 cut(s)	5, 156, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	5, 156, 262
BseGI	GGATG	4 cut(s)	101, 166, 422, 569
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	308, 537
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	282
Bsh1236I	CGCG	2 cut(s)	431, 511
BsiHKAI	GWGCWC	1 cut(s)	636
BslFI	GGGAC	3 cut(s)	424, 441, 497
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	3 cut(s)	424, 441, 497
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	1 cut(s)	374
Bsp19I	CCATGG	1 cut(s)	156
Bsp68I	TCGCGA	1 cut(s)	511
BspACI	CCGC	2 cut(s)	99, 217
BspCNI	CTCAG	2 cut(s)	307, 538
BspFNI	CGCG	2 cut(s)	431, 511
BspLI	GGNNCC	2 cut(s)	385, 457
BspMI	ACCTGC	1 cut(s)	645
BspPI	GGATC	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	5, 156, 262
BssMI	GATC	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	156, 262
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	4 cut(s)	9, 46, 120, 586
Bst6I	CTCTTC	4 cut(s)	138, 162, 337, 639
BstDEI	CTNAG	2 cut(s)	294, 546
BstDSI	CCRYGG	2 cut(s)	5, 156
BstF5I	GGATG	4 cut(s)	101, 166, 422, 569
BstFNI	CGCG	2 cut(s)	431, 511
BstKTI	GATC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 646
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	472
BstUI	CGCG	2 cut(s)	431, 511
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BtgI	CCRYGG	2 cut(s)	5, 156
BtrI	CACGTC	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	101, 166, 422, 569
BtsIMutI	CAGTG	1 cut(s)	183
BtuMI	TCGCGA	1 cut(s)	511
BveI	ACCTGC	1 cut(s)	645
Cfr13I	GGNCC	3 cut(s)	214, 384, 455
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	10, 64, 627
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	2 cut(s)	157, 574
CviJI	RGCY	5 cut(s)	22, 109, 306, 523, 607
CviKI_1	RGCY	5 cut(s)	22, 109, 306, 523, 607
CviQI	GTAC	3 cut(s)	10, 64, 627
DdeI	CTNAG	2 cut(s)	294, 546
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
Eam1104I	CTCTTC	4 cut(s)	138, 162, 337, 639
EarI	CTCTTC	4 cut(s)	138, 162, 337, 639
Eco130I	CCWWGG	2 cut(s)	156, 262
Eco47I	GGWCC	3 cut(s)	214, 384, 455
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	156, 262
ErhI	CCWWGG	2 cut(s)	156, 262
FaeI	CATG	2 cut(s)	160, 577
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FaqI	GGGAC	3 cut(s)	424, 441, 497
FatI	CATG	2 cut(s)	156, 573
FauNDI	CATATG	1 cut(s)	286
FokI	GGATG	4 cut(s)	108, 173, 409, 556
FspBI	CTAG	4 cut(s)	245, 329, 353, 641
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	160, 577
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	56, 577, 616, 687
HpaI	GTTAAC	1 cut(s)	394
HphI	GGTGA	2 cut(s)	85, 113
Hpy166II	GTNNAC	5 cut(s)	40, 152, 193, 394, 469
Hpy188I	TCNGA	2 cut(s)	427, 547
Hpy188III	TCNNGA	3 cut(s)	387, 510, 589
Hpy8I	GTNNAC	5 cut(s)	40, 152, 193, 394, 469
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	326, 544
HpyCH4III	ACNGT	4 cut(s)	9, 46, 120, 586
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	2 cut(s)	164, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 646
HpyF3I	CTNAG	2 cut(s)	294, 546
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	160, 577
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	374
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	2 cut(s)	86, 151
MaeI	CTAG	4 cut(s)	245, 329, 353, 641
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	5 cut(s)	155, 179, 354, 534, 656
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	6 cut(s)	33, 69, 231, 303, 409, 534
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	3 cut(s)	393, 410, 516
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	2 cut(s)	431, 511
MwoI	GCNNNNNNNGC	2 cut(s)	230, 646
NcoI	CCATGG	1 cut(s)	156
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	1 cut(s)	374
NlaIII	CATG	2 cut(s)	160, 577
NlaIV	GGNNCC	2 cut(s)	385, 457
NmuCI	GTSAC	1 cut(s)	50
NruI	TCGCGA	1 cut(s)	511
PaqCI	CACCTGC	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	56, 577, 616, 687
PflFI	GACNNNGTC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	385, 457
PspPI	GGNCC	3 cut(s)	214, 384, 455
PsuI	RGATCY	1 cut(s)	374
PsyI	GACNNNGTC	1 cut(s)	436
RruI	TCGCGA	1 cut(s)	511
RsaI	GTAC	3 cut(s)	11, 65, 628
RsaNI	GTAC	3 cut(s)	10, 64, 627
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	3 cut(s)	393, 410, 516
Sau3AI	GATC	1 cut(s)	374
Sau96I	GGNCC	3 cut(s)	214, 384, 455
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	8 cut(s)	65, 111, 230, 406, 420, 440, 609, 639
SfaNI	GCATC	2 cut(s)	86, 151
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	3 cut(s)	214, 384, 455
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	99, 217
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	4 cut(s)	245, 329, 353, 641
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	156, 262
TaaI	ACNGT	4 cut(s)	9, 46, 120, 586
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	271, 609
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	4 cut(s)	56, 577, 616, 687
Tru1I	TTAA	3 cut(s)	393, 410, 516
Tru9I	TTAA	3 cut(s)	393, 410, 516
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	273, 411, 590
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	436
VpaK11BI	GGWCC	3 cut(s)	214, 384, 455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	4 cut(s)	245, 329, 353, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.