Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004971

Physical Location & Seq

Genomic Coordinates Reverse (-)

35437067 .. 35439959

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCTCGATACAAAGATGAACCTCCTGCTGTTCGTGTTTACACAGTCTGTGACGAATCAAGGTATTTGATAGTGAGGAATGTTCCATCTTTGGGATGCGGTGATGAGCTGTTGACGCTGTTCTCATCCTATGGAGATGTAGAGGAGTGTAAACCAATGGATGCAGAAGATTGTGAGCAATTTACTGATGTTTACTGGATAAAGTTTCGTCTTGCCAGCAACGCCAGGTTTGCAAAGAGGAAGTTAGACGAGTATGTTTTCCTTGGAAATCGACTGGGGGTTTCATATGCTCCTCAGTTTGAGAGCCTTGCCGACACAAAGGACAAACTGGAAAGCAGGAGAAGAGAAGTTCTAGCACGGTTGAACCCTTGTGGTTCTAAAGGGTCCAGAGTTAACAAGTCAGGTGCTTTAACCGAGGTTTCGTTCGATGCAACCCCATCCCAGACTTACAGCGATTCCCAACGTGTAAACTGTAGCCCAAGGGACTATGGACAATCACAACTTACTTCGCAAGTTAATAATCCTCCCATTACAAGAGTTTCCTCTGAGAAGGTTTGTTATTGCTCTCATATGTTAACAAGTCTCATGCTTATAACACCCTTCCACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

203

Amino Acids

23.04

Weight (kDa)

6.73

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27790 AT2G27790 AT2G27790 AT2G27790 AT5G27300 AT5G27300 AT5G27300
fragaria_vesca	FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340
malus_domestica	MD11G1211500.v1.1
prunus_persica	Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1
pyrus_communis	pycom11g18680
rosa_chinensis	RchiOBHm_Chr5g0041131
rosa_laevigata	RLG00000034028
rosa_multiflora	Rmu_co7980486.1_g000001 Rmu_sc0001760.1_g000004 Rmu_sc0009425.1_g000002 Rmu_sc0039274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039540
rosa_rugosa	Rorug05G0190000
rosa_samantha	Rh5AG275900 Rh5BG280600 Rh5CG312800 Rh5DG288900
rosa_wichuraiana	Rw5G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
AciI	CCGC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	384
BccI	CCATC	2 cut(s)	94, 445
BciT130I	CCWGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	2 cut(s)	353, 610
BfmI	CTRYAG	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	3 cut(s)	86, 151, 418
BmuI	ACTGGG	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	262, 414, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	200, 279, 333
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	262, 414, 479
BseGI	GGATG	4 cut(s)	101, 125, 166, 437
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	308, 537
BseNI	ACTGG	3 cut(s)	200, 279, 333
BseRI	GAGGAG	2 cut(s)	158, 282
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	497
BspACI	CCGC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	307, 538
BspLI	GGNNCC	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	200, 279, 333
BssECI	CCNNGG	3 cut(s)	262, 414, 479
BssT1I	CCWWGG	2 cut(s)	262, 479
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	46, 360, 473
Bst6I	CTCTTC	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	294, 546
BstF5I	GGATG	4 cut(s)	101, 125, 166, 437
BstMAI	GTCTC	1 cut(s)	587
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 221, 230
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	472
BtsCI	GGATG	4 cut(s)	101, 125, 166, 437
Cac8I	GCNNGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	384
CseI	GACGC	1 cut(s)	124
CviAII	CATG	1 cut(s)	586
CviJI	RGCY	3 cut(s)	109, 306, 477
CviKI_1	RGCY	3 cut(s)	109, 306, 477
DdeI	CTNAG	2 cut(s)	294, 546
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	262, 479
Eco47I	GGWCC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	262, 479
ErhI	CCWWGG	2 cut(s)	262, 479
FaeI	CATG	1 cut(s)	589
FaiI	YATR	9 cut(s)	132, 255, 286, 288, 489, 570, 572, 587, 593
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	1 cut(s)	585
FauNDI	CATATG	2 cut(s)	286, 570
FokI	GGATG	4 cut(s)	108, 112, 173, 424
FspBI	CTAG	2 cut(s)	353, 610
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	589
HincII	GTYRAC	3 cut(s)	114, 394, 576
HindII	GTYRAC	3 cut(s)	114, 394, 576
HinfI	GANTC	2 cut(s)	56, 455
HpaI	GTTAAC	2 cut(s)	394, 576
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	7 cut(s)	40, 114, 152, 193, 394, 469, 576
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	7 cut(s)	40, 114, 152, 193, 394, 469, 576
HpyAV	CCTTC	2 cut(s)	544, 610
HpyCH4III	ACNGT	3 cut(s)	46, 360, 473
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	164, 233, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 221, 230
HpyF3I	CTNAG	2 cut(s)	294, 546
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	589
KspAI	GTTAAC	2 cut(s)	394, 576
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	3 cut(s)	86, 151, 418
MaeI	CTAG	2 cut(s)	353, 610
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	179, 354
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	9 cut(s)	15, 33, 69, 136, 231, 303, 409, 534, 553
MseI	TTAA	4 cut(s)	393, 410, 516, 575
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	115, 221, 230
NdeI	CATATG	2 cut(s)	286, 570
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	56, 455
PsiI	TTATAA	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	393, 410, 516, 575
Sau96I	GGNCC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	8 cut(s)	25, 65, 111, 230, 406, 420, 466, 555
SfaNI	GCATC	3 cut(s)	86, 151, 418
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	384
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	353, 610
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	262, 479
TaaI	ACNGT	3 cut(s)	46, 360, 473
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	7, 271, 426
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	56, 455
Tru1I	TTAA	4 cut(s)	393, 410, 516, 575
Tru9I	TTAA	4 cut(s)	393, 410, 516, 575
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	33, 273
VpaK11BI	GGWCC	1 cut(s)	384
XspI	CTAG	2 cut(s)	353, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.