Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004971

Physical Location & Seq

Genomic Coordinates Reverse (-)

35541480 .. 35543045

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034028

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCCTCGATACAAAGATGAGCCTCCTGCTGTTCGTGTTTACACAGTCTGTGACGAATCAAGGTATTTGATAGTGAGGAATGTTCCATCTTTGGGATGCGGTGATGAGCTGTTGAAGCTGTTCTCATCCTATGGAGATGTAGAGGAGTGTAAACCAATGGATGCAGAAGATTGTGAGCAATTCACTGATGTTTACTGGATAAAGTTTCGTCTTGTCAGCAATGCCAGGTTTGCAAAGAGGAAGTTAGACGAGTATGTTTTCCTTGGAAATCGACTGGGGGTTTCTTATGCTCCTCAGTTTGAGAGCCTTGCCGACACAAAGGACAAACTGGAAGGCAGGAGAAGAGAAGTTCTAGCACGATTGAACCCTTGTGGTTCTAAAGGGTCCAGAGTTAACAAGTCAGGTGCTTTAACCGAGGTTTCGTTCGATGCAACCCCGTCCCAGACTTGCAGCGATTCCCAACGTGTAAACTGTAGCCCAAGGGACTATGGACAATCACAACTTACTTCGCAAGTTGATAATCCTCCCATTACAAGAGTTTCCTCTGAGAAGGAATATTTTGCTTCCCCATCCATGAATCAAACTGTCCAGATGGTCAGGGAAAAGCTCGATAAGATTCAATCAAGTACCGAGCATCTGCTAGAAGGTCATAAATCCAAGAAAGCAAGGGTGGACAATAGAAGGAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

26.21

Weight (kDa)

8.61

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27790 AT2G27790 AT2G27790 AT2G27790 AT5G27300 AT5G27300 AT5G27300
fragaria_vesca	FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340
malus_domestica	MD11G1211500.v1.1
prunus_persica	Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1
pyrus_communis	pycom11g18680
rosa_chinensis	RchiOBHm_Chr5g0041131
rosa_laevigata	RLG00000034028
rosa_multiflora	Rmu_co7980486.1_g000001 Rmu_sc0001760.1_g000004 Rmu_sc0009425.1_g000002 Rmu_sc0039274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039540
rosa_rugosa	Rorug05G0190000
rosa_samantha	Rh5AG275900 Rh5BG280600 Rh5CG312800 Rh5DG288900
rosa_wichuraiana	Rw5G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	115, 364, 620
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	109, 118, 607
AluI	AGCT	3 cut(s)	109, 118, 607
ApeKI	GCWGC	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	3 cut(s)	94, 577, 586
BciT130I	CCWGG	1 cut(s)	226
BfaI	CTAG	2 cut(s)	353, 641
BfmI	CTRYAG	1 cut(s)	472
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	4 cut(s)	86, 151, 418, 643
BmuI	ACTGGG	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	262, 414, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	200, 279, 333
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	262, 414, 479
BseGI	GGATG	4 cut(s)	101, 125, 166, 569
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	308, 537
BseNI	ACTGG	3 cut(s)	200, 279, 333
BseRI	GAGGAG	2 cut(s)	158, 282
BseXI	GCAGC	1 cut(s)	462
BslFI	GGGAC	2 cut(s)	424, 497
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	424, 497
BspACI	CCGC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	307, 538
BspLI	GGNNCC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	3 cut(s)	200, 279, 333
BssECI	CCNNGG	3 cut(s)	262, 414, 479
BssT1I	CCWWGG	2 cut(s)	262, 479
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	46, 473, 586
Bst6I	CTCTTC	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	294, 546
BstF5I	GGATG	4 cut(s)	101, 125, 166, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 230
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	462
BtsCI	GGATG	4 cut(s)	101, 125, 166, 569
BtsIMutI	CAGTG	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	1 cut(s)	574
CviJI	RGCY	6 cut(s)	22, 109, 118, 306, 477, 607
CviKI_1	RGCY	6 cut(s)	22, 109, 118, 306, 477, 607
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	2 cut(s)	294, 546
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	262, 479
Eco47I	GGWCC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	262, 479
ErhI	CCWWGG	2 cut(s)	262, 479
FaeI	CATG	1 cut(s)	577
FaiI	YATR	6 cut(s)	132, 255, 288, 489, 575, 651
FaqI	GGGAC	2 cut(s)	424, 497
FatI	CATG	1 cut(s)	573
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	4 cut(s)	108, 112, 173, 556
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	2 cut(s)	353, 641
GluI	GCNGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	5 cut(s)	56, 455, 577, 616, 687
HpaI	GTTAAC	1 cut(s)	394
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	6 cut(s)	40, 152, 193, 394, 469, 673
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	2 cut(s)	387, 589
Hpy8I	GTNNAC	6 cut(s)	40, 152, 193, 394, 469, 673
HpyAV	CCTTC	4 cut(s)	326, 544, 638, 675
HpyCH4III	ACNGT	3 cut(s)	46, 473, 586
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	4 cut(s)	164, 233, 431, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 230
HpyF3I	CTNAG	2 cut(s)	294, 546
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	577
KspAI	GTTAAC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	4 cut(s)	86, 151, 418, 643
MaeI	CTAG	2 cut(s)	353, 641
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	179, 354
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	9 cut(s)	15, 33, 69, 136, 231, 303, 409, 534, 553
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	2 cut(s)	393, 410
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	115, 230
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	5 cut(s)	56, 455, 577, 616, 687
PkrI	GCNGC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	384
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	393, 410
SatI	GCNGC	1 cut(s)	451
Sau96I	GGNCC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	9 cut(s)	65, 111, 120, 230, 406, 420, 466, 609, 649
SfaNI	GCATC	4 cut(s)	86, 151, 418, 643
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	384
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	99
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	2 cut(s)	353, 641
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	262, 479
TaaI	ACNGT	3 cut(s)	46, 473, 586
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	4 cut(s)	7, 271, 426, 609
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	5 cut(s)	56, 455, 577, 616, 687
Tru1I	TTAA	2 cut(s)	393, 410
Tru9I	TTAA	2 cut(s)	393, 410
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	2 cut(s)	353, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.